Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02166 ATGAGTTTGCCTTTGCCCTTTCGTTCTCCACTTTCTATTGTGATCGATTACTTTACCAATGGTGATTCTTCTGGTGAGCCCTTGACCACGATTCCTCGTAGGCGGTTTTGGGGTCAGTGCGGTTCTGGTTCTGGTGGTGCAACTGAGGATGTTACGCGAGGCATCGTTGGAAATGGAGAGCAAGAGGGGAGTTCCTCGTCGCGGAATCCGGTTGGGGTTGGGACGGTGACGATGGAGGAGGCTGAGGATATGGTTCCTCTGGGTGAGGTGCCTTTGGATGATGTTCTTGGACTTGCTCACGGTAGGGGCAACTCTAGCTCTAATGTTCAGCAGGTTGCAAAGTGGATGGAGCAGATTATCCCTTTCTCCCTCTTGCTGTTCATTGTCATCGTCCGCCGGCATTGGCAAGGCTTCTTTGTCACAACCTGTGTATCAGCTGTGATGTTCATGTCAAATGAATTTGTTAAGAAACAGACAGCTCTAAAGGGAGATCGGAGAGTCTCTGTTCTTCTTGGTATCTCTTTTGTCTTCATGCTGTATGTGATATGCATTTACTGGTGGTATCGAAATGATTGTCTTTTATACCAACTGGCCATGTTTCCACCAAAAGCAACACCACCTTTCTGGCATACAATATTTATCATTTTGGTTAATGATGCATTGATACGGCAAGCAGCAATGGCTTTAAAGTGTTTGTTGCTTATTTACTACAAAAATAGAGGAGGCCAGAACTTCGGAGAGCAGGGTCAAATGTTAACTTTGGTTGAGTATACTCTACTATTGTATCGTGCTTTGTTGCCAACACCAGTTTGGTGCCGATTTCTCTTGAACAAGGATTCTGGAAGTCTCTTTTCATCAGTGACCACAGTATTGTATGTAACTTTGAAACTGATATTTGTAGTTGACAAGGTCCATTGCTTCCTTCGAGCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTTTATGCAACCATGGAACAGGTCAATGCTGGTGGTGGTGAACTGTGCACTATATGCCAAGAGAAAATGCATGTTCCTATCTTGTTGTGCTGTAAACACATGTTTTGCGAGCAGTGTGTATCCGAATGGTCAGTTTATAATTTTATTCCTTGTTTGGACCTTCTAAATTGA 1137 0.4371 MSLPLPFRSPLSIVIDYFTNGDSSGEPLTTIPRRRFWGQCGSGSGGATEDVTRGIVGNGEQEGSSSSRNPVGVGTVTMEEAEDMVPLGEVPLDDVLGLAHGRGNSSSNVQQVAKWMEQIIPFSLLLFIVIVRRHWQGFFVTTCVSAVMFMSNEFVKKQTALKGDRRVSVLLGISFVFMLYVICIYWWYRNDCLLYQLAMFPPKATPPFWHTIFIILVNDALIRQAAMALKCLLLIYYKNRGGQNFGEQGQMLTLVEYTLLLYRALLPTPVWCRFLLNKDSGSLFSSVTTVLYVTLKLIFVVDKVHCFLRALKALSKKEVHYGVYATMEQVNAGGGELCTICQEKMHVPILLCCKHMFCEQCVSEWSVYNFIPCLDLLN. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02166 378 SUPERFAMILY RING/U-box 326 370 - -
Seca4g02166 378 MobiDBLite consensus disorder prediction 42 71 - -
Seca4g02166 378 ProSitePatterns Zinc finger RING-type signature. 353 362 IPR017907 -
Seca4g02166 378 ProSiteProfiles Zinc finger RING-type profile. 338 373 IPR001841 -
Seca4g02166 378 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 104 365 IPR044235 GO:0061630|GO:1904294
Seca4g02166 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 373 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02166 Seca-Chr4 36802927 36816108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02166 43 365 C3H Transcription Factor Family AT5G01960 56.845 8.14e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02166 - K22379 aprc:113864793 479.559