Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02162 ATGAAGTTGCAGTTCTCTATTGTTGCTCTTGTTCTATTTAGCTCCATACTGTCTCTTTTTGGCTTGATTGTAGCTGACTTGAACTCTGACCGACAAGCTCTCTTGGAATTTGCTTCTTCTGTCCCACATGCCCCAAGGCTCAACTGGAATGACTCTGCTTCAATTTGTACCTCATGGGTTGGTGTGACTTGCAACTCAAATGGAACTCGTGTCATAGGTATCCATCTTCCAGGAATTGGATTAACTGGGTCCATTCCAGAGAACACCTTAGGAAAACTAGATGCTCTTAGGGTCTTGAGCCTTCATTCCAATGGACTTGGAGGAAGTCTTCCTTCTAACATCCTTTCCATTCCTTCACTCCAATTTGCACACCTACAGCACAATAACTTCTCAGGTCTAATTCCTTCCTCTGTCTCCCCTAGACTCATTGCATTAGATCTTTCCTTTAACTCCTTCTCTGGCAGTATCCCACCTGTATTTCAGAACCTGAGAAGACTCATCTGGTTGTATCTCCAAAACAATTCCATATCTGGAACTATCCCTGACTTCAACCTTCCAAGTCTCAAACATTTGAATTTGAGCTATAATAACTTAAATGGCTCAATTCCAAATTCCATCAAGACATTCCCTTACACTTCTTTTCTTGGGAATTCTCTTTTATGTGGGCCACCTCTCAATCATTGCTCTACAATCTCCCCTTCTCCATCTCCTTCCTCTTCTCACCAGCCACTCTCTCCTGCAACCACTCAAAACCAAAAAGCTGCTGCTACCCATAAGAAAAGCTTTGGCCTAGCTGTAATACTTGCTCTAATCATTGGGAGCATTGCCTTCCTCTCTCTACTATTTTTAGTGATCTCTGTATGCTGTTTGAAGAGGAAAAACAGTAAAAGCAGTGGCATACTGAAAGGAAAGGCATCTTGTGCTGGAAAGACTGAGGTTTCAAAGAGTTTTGGGAGTGGGGTGCAAACTGCTGAAAAGAACAAGCTATTTTTCTTTGAAGGTTCCTCTTATAGTTTTGACCTTGAGGATTTACTAAAAGCTTCAGCTGAAGTTCTTGGAAAAGGAAGCTATGGAACAGCATACAAGGCTGTTTTGGAAGAGGGAACAACAGTGGTAGTTAAAAGGTTAAAGGAAGTTGTGGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAGATTGTGGGAAGAATTGGACACCACCCCAATGTCATGCCTCTTAGAGCTTATTACTATTCCAAAGATGAGAAACTTCTAGTTTACAACTACATGCCAGGAGGCAGCTTGTTTTTCTTGTTGCATGGAAATAGGGGTGCAGGAAGAACTCCATTAGATTGGGATTCTAGAGTGAAGCTTGCACTTGGAGCTGCTAAGGGAATTGCTTTCATTCACTCTGAAGGGGGTCCAAAATTTGCACATGGCAACATCAAGTCAACCAATGTGCTCATAACTCAAGAACTTGATAGCTGCATCTCTGATGTTGGATTGCCTCCTCTGATGAATGCCCCATCAACCATGTCTAGAGCCAATGGCTATAGAGCTCCAGAAGTTACTGATTCCAGAAAGATCACACAGAAGTCTGATGTTTACAGCTTTGGTGTGGTTCTTCTTGAAATGCTTACAGGCAAGACTCCACTAAGATATCCTGGCTATGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGATCTGTTGTTAGAGAGGAATGGACAGCTGAAGTCTTTGATGAGGAGCTTCTTAGAGGACAATATGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCACTGGCATGTGTAGCTAAGGCACCAGATATGAGGCCTAAAATGGATGAAGCTGTTAGAATGATAGAGGAAATTAAACAGCCTGAGTTGAAGAACAGGCCATCCTCTGAGTCTGACTCTAATGTGCAGACACCAGAAGATTAA 1920 0.4266 MKLQFSIVALVLFSSILSLFGLIVADLNSDRQALLEFASSVPHAPRLNWNDSASICTSWVGVTCNSNGTRVIGIHLPGIGLTGSIPENTLGKLDALRVLSLHSNGLGGSLPSNILSIPSLQFAHLQHNNFSGLIPSSVSPRLIALDLSFNSFSGSIPPVFQNLRRLIWLYLQNNSISGTIPDFNLPSLKHLNLSYNNLNGSIPNSIKTFPYTSFLGNSLLCGPPLNHCSTISPSPSPSSSHQPLSPATTQNQKAAATHKKSFGLAVILALIIGSIAFLSLLFLVISVCCLKRKNSKSSGILKGKASCAGKTEVSKSFGSGVQTAEKNKLFFFEGSSYSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQQMEIVGRIGHHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNRGAGRTPLDWDSRVKLALGAAKGIAFIHSEGGPKFAHGNIKSTNVLITQELDSCISDVGLPPLMNAPSTMSRANGYRAPEVTDSRKITQKSDVYSFGVVLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKAPDMRPKMDEAVRMIEEIKQPELKNRPSSESDSNVQTPED. 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02162 639 Gene3D Ribonuclease Inhibitor 183 229 IPR032675 -
Seca4g02162 639 MobiDBLite consensus disorder prediction 617 639 - -
Seca4g02162 639 CDD STKc_IRAK 352 617 - -
Seca4g02162 639 SUPERFAMILY L domain-like 33 226 - -
Seca4g02162 639 Gene3D Ribonuclease Inhibitor 27 182 IPR032675 -
Seca4g02162 639 Pfam Protein kinase domain 350 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02162 639 Gene3D Transferase(Phosphotransferase) domain 1 422 636 - -
Seca4g02162 639 FunFam Leucine-rich repeat receptor-like protein kinase 140 228 - -
Seca4g02162 639 MobiDBLite consensus disorder prediction 231 252 - -
Seca4g02162 639 Gene3D Phosphorylase Kinase; domain 1 311 421 - -
Seca4g02162 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 422 628 - -
Seca4g02162 639 ProSitePatterns Protein kinases ATP-binding region signature. 352 383 IPR017441 GO:0005524
Seca4g02162 639 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Seca4g02162 639 ProSiteProfiles Leucine-rich repeat profile. 187 209 IPR001611 GO:0005515
Seca4g02162 639 PANTHER OS05G0588300 PROTEIN 11 629 - -
Seca4g02162 639 FunFam pollen receptor-like kinase 1 314 421 - -
Seca4g02162 639 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02162 639 SUPERFAMILY Protein kinase-like (PK-like) 350 615 IPR011009 -
Seca4g02162 639 FunFam Leucine-rich repeat receptor-like protein kinase 29 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02162 Seca-Chr4 36746513 36751268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02162 5 635 Receptor kinase-like Gene Family AT5G58300 60.686 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g02162 Pkinase 1.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02162 - - aprc:113868460 1089.33