Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02152 ATGTTACACTTGGTGGTAAACATCGATTTCTTCTTTTCCCTTCACTGGCAACACAACCGCAGCCGCAGGAGACCCCAGGCACCATTCTGGAGGAGTTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTATGAAGCTGCGAAGAAAGCGGCGGATGCGTCCAGCTCCACCGATAGCGAACACGAAGAAAGCCGATGTATTGATGCGCTCGAGCAGCTCAAGAATTTCCCCGTTAATTACAAGATTCTCGTCAACACCCAGCAGGTGGGAAAACATCTCAAAGTTCTCACTAAGCATCCCAGGCAGAAAATTCGGGCTTTTGCTGCTGACCTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAGAACGGGGGCTCTGATAATAAGGTTGAGTCAGCAAATGGAGAGAGATCTAAAGCTGGGAAGATGCAAAAGAGTCCTTCAGTTAAGGTTGAGAAAGGTGAAACTGTCAAGGTTGAGAAAATTGATAGGAATGGTACATCAAGGTCAAGCTCAGAAAATATAAAGAAGGTACAAAATGTGGATGTCAAAACTGAGAAAACTGATCGTACAGCAAGTGTCAAAGTGGAAAAGATAGCCAAGGATGAAAAGCCAGTTTCTGGGGCGAAGAAAATGTCATCCAGCTCTGCCACTCCTCCAAAGCTAAAGACTATGATTAAATCTAATGATTCAGTGCGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTATCTAAGGTATCTGGAGAGGCAGATGAAGATGTCATGGATGAAGTTAATGCATGCGACCCTATTCGGGTTGCTGTGACAGTGGAGTCTGTATTATTTGAAAAGTGGGGTCCTTCAAATGGGGCCCAAAAGGTTAAGTATAGATCCTTAATGTTCAACCTTAAGGATCAAAATAACCCAGATTTCCGGAGAAAAGTTCTACTTGGTATTGTTGAACCACAGCGGCTAGTCAACATGAGCACAGCAGAAATGGCTAGTGAGCAAAGGAAACAGCAGATTGAGAAAATCGAAAAGAAAGCTTTGTTTGAATGTGAGCGTGGAGCTCAACCAAAAGCTACAACTGATCAATTTAAGTGTGGTCGGTGTGGCCAAAGGAAGTGCACCTATTATCAAATGCAGACCCGCAGTGCCGATGAACCTATGACAACCTATGTCACTTGTGTTGTTTGCAATAACAGGTGGAAGTTCTGTTAG 1221 0.4357 MLHLVVNIDFFFSLHWQHNRSRRRPQAPFWRSWLGSMEKELVELYEAAKKAADASSSTDSEHEESRCIDALEQLKNFPVNYKILVNTQQVGKHLKVLTKHPRQKIRAFAADLIEIWKGIIIKETSKNKNGGSDNKVESANGERSKAGKMQKSPSVKVEKGETVKVEKIDRNGTSRSSSENIKKVQNVDVKTEKTDRTASVKVEKIAKDEKPVSGAKKMSSSSATPPKLKTMIKSNDSVRDKIRELLHEALSKVSGEADEDVMDEVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGIVEPQRLVNMSTAEMASEQRKQQIEKIEKKALFECERGAQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCNNRWKFC. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02152 406 Gene3D - 215 334 IPR036575 GO:0006351
Seca4g02152 406 SMART Cys4_2 366 405 IPR001222 GO:0003676|GO:0006351|GO:0008270
Seca4g02152 406 ProSitePatterns Zinc finger TFIIS-type signature. 368 403 IPR001222 GO:0003676|GO:0006351|GO:0008270
Seca4g02152 406 Pfam Transcription factor S-II (TFIIS) 366 404 IPR001222 GO:0003676|GO:0006351|GO:0008270
Seca4g02152 406 Gene3D - 335 406 - -
Seca4g02152 406 ProSiteProfiles TFIIS N-terminal domain profile. 43 123 IPR017923 -
Seca4g02152 406 Pfam TFIIS helical bundle-like domain 70 120 IPR017923 -
Seca4g02152 406 CDD TFIIS_I 59 120 - -
Seca4g02152 406 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 48 406 - -
Seca4g02152 406 Coils Coil 328 348 - -
Seca4g02152 406 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 34 135 IPR035441 -
Seca4g02152 406 ProSiteProfiles TFIIS central domain profile. 238 361 IPR003618 GO:0006351
Seca4g02152 406 SMART mid_6 236 344 IPR003618 GO:0006351
Seca4g02152 406 SUPERFAMILY Zinc beta-ribbon 345 404 - -
Seca4g02152 406 MobiDBLite consensus disorder prediction 126 159 - -
Seca4g02152 406 FunFam Probable Transcription elongation factor S-II 335 406 - -
Seca4g02152 406 SMART TFS2_5 44 122 IPR003617 GO:0005634
Seca4g02152 406 PIRSF TFIIS 37 406 IPR035100 -
Seca4g02152 406 NCBIfam transcription elongation factor S-II 50 406 IPR006289 GO:0003676|GO:0005634|GO:0006368
Seca4g02152 406 SUPERFAMILY Elongation factor TFIIS domain 2 223 336 IPR036575 GO:0006351
Seca4g02152 406 Pfam Transcription factor S-II (TFIIS), central domain 235 352 IPR003618 GO:0006351
Seca4g02152 406 ProSiteProfiles Zinc finger TFIIS-type profile. 364 404 IPR001222 GO:0003676|GO:0006351|GO:0008270
Seca4g02152 406 CDD Zn-ribbon_TFIIS 359 405 - -
Seca4g02152 406 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 37 135 IPR035441 -
Seca4g02152 406 MobiDBLite consensus disorder prediction 215 229 - -
Seca4g02152 406 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02152 Seca-Chr4 36646089 36650710 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca4g02152 TFIIS_M 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02152 K03145 - gmx:100811982 640.958