Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02150 ATGAGTATTCTTTTCCCTGAAAGTGTCTCAGAGAAGAGAAAGCGAGTCATTAGAGAGCTGGTTCAGGGGCAGGAGTATGCTACTCAGCTCAAGTTTCTGCTTCAGAAGCCTATTGACTCTGATGGGTCTCCTTCAGCTAAAGAATTGGTGGCCAATGTGTTGAGATCTTTCACTGAGACTCTTTCTGTTATGACTTCTTCTTCTGAAGCTGCTGGTGATGAGGTTGCTGATCAGAATATTGCCAATTCTGGTGAAGATGGGACTTCAAGCAATGATATTCCTCTGAGGTCTGAAGATTCAACCGAAAGTAGGAAGAGGTTGTTACCATCAGAAACCAACAAGGATCGCAGAGGTTCCTATAAAAGAAGGAAGACTGAACAGACTGTATCCATAGTCTCCCAAACAACTGATGATAATCATGCCTGGAGAAAGTACGGACAGAAGGAAATCCTTAATTCTCAATTCCCCAGGAGTTACTTCAGGTGCACTCGGAAGTATGACCAAGGTTGCCGGGCAACCAAACAGGTGCAAAGGGTACAAGAGAATCCAAACATGTACCAAATTACATATATTGGATTTCACACATGCAAAGACACTCTAAAGGCTCCACAAATGGTCACATATTCTGATACATGGGATTCATTTCTTGTGAATTCCTCCCATCCTGGTGATGAGTCAAAGGTGCCAAATCTACAAGAGCCCCCTATTAGCCCAACTGTAAAACAAGAATATCCCAACGGTGATACAGACAACCTGTGGTCTGATTTGAAGGATTTTGAACTATCCAAGCCTGCCATTGTACCTTCTGATAATGTAGATACTGTGTATTCATGTACTGGATCTCAAAATCTGGACATGGATTTTGGGGTATTTTCTTCTCATCATTTTACCACCGATTTCCACTTTGATGATGAAAGTCATTTGCTTTATAGTTAG 936 0.4188 MSILFPESVSEKRKRVIRELVQGQEYATQLKFLLQKPIDSDGSPSAKELVANVLRSFTETLSVMTSSSEAAGDEVADQNIANSGEDGTSSNDIPLRSEDSTESRKRLLPSETNKDRRGSYKRRKTEQTVSIVSQTTDDNHAWRKYGQKEILNSQFPRSYFRCTRKYDQGCRATKQVQRVQENPNMYQITYIGFHTCKDTLKAPQMVTYSDTWDSFLVNSSHPGDESKVPNLQEPPISPTVKQEYPNGDTDNLWSDLKDFELSKPAIVPSDNVDTVYSCTGSQNLDMDFGVFSSHHFTTDFHFDDESHLLYS. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02150 311 MobiDBLite consensus disorder prediction 81 96 - -
Seca4g02150 311 SMART WRKY_cls 136 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02150 311 SUPERFAMILY WRKY DNA-binding domain 134 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g02150 311 MobiDBLite consensus disorder prediction 65 131 - -
Seca4g02150 311 MobiDBLite consensus disorder prediction 221 247 - -
Seca4g02150 311 ProSiteProfiles WRKY domain profile. 137 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02150 311 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 220 IPR044810 GO:0003700
Seca4g02150 311 Pfam WRKY DNA -binding domain 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02150 311 Gene3D WRKY domain 121 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g02150 311 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02150 Seca-Chr4 36609460 36611633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02150 12 302 WRKY Transcription Factor Family AT3G56400 37.662 1.59e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g02150 WRKY 2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02150 - - gmx:100170683 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02150 4 36609460 36611633 Seca4g02150 4 36609460 36611633 ECH
Seca4g02150 4 36609460 36611633 Seca4g02150 4 36609460 36611633 PCT