Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02149 ATGACACAGCACAACAAACACGCAGAAACAATGGAAGAGGTAATTAATTGTATTCGCCGAGCTTGTGAATTAGCTCAAAACCTTGAATCAGACTTACCCAACTTGGCTAACCAGTCTTCTATGCTGTCCCTATCCATTGATGAGATAGTTGAGACACTGAGTGGTGCAAAAGGAAGGTTATTAAAAATCTACCGACAGGACCAGAAATCAGCATCTTCATCATTTGCTGAGATGGATGCAACGAGTCTAATGCGGGGATGGCTCGGGTGTGGTTACGTGGGTCAGTTGTCTCAAATGCAGCAGCTAATTCAAGTAGTGAGGGGTACCACATCGGATGATGTGCGGATTGGTGAAATGGGAGGGAGAAATGTGGTGGATTCTGAGAGATTGAAAGGATCTGAAGGACGGGTGCTGGTGATTGATCTTGAAGCATCACCCTCACGACCACGAAGATTAAGCAGAAACATTGACCTGGAGAAAAATAAAATGATGGTTCCTGCACCTCAGTTTGGCAACAAAGAGATGCCGCGAGAGGATGGCTTCACTTGGAGAAAATATGGCCAGAAACAGATACTTGGCTCCAAGTACCCAAGGAGTTACTACAGGTGCACATACCAGAAATTATATGAATGCAAAGCCAAGAAGCAAGTGCAGAGACATGATCACAATCATAACATATTCGAGGTAACATACAGAGGGAACCACACTTGCCACATGTCCTCCACAACACCTTCATCATCAGTTCAACCACTGCAACTACTTTTGGAAAGTGGCATTTCCTCATCTTCAGGTAATTCCGGCCGGTGGCTGTCGTCGACGGTGAACCTCAGCCTCCATGCTGATGGCGGTGGTGGCAGTTGTGGGAGTGGTGGAGCCTCCACTACCAGTTCAAGATATGTTGCTGATTATCCTGTGGTGGATATGGCCGATGTTATGTTCAACTCTGCAGGTAGCAGCAGTGGTAACAGTATGGAATCCCTCTTCCCCACTACTGCTGAAGATAAATGGGAACCCAAGGAGAAGAAAAACTGA 1032 0.4622 MTQHNKHAETMEEVINCIRRACELAQNLESDLPNLANQSSMLSLSIDEIVETLSGAKGRLLKIYRQDQKSASSSFAEMDATSLMRGWLGCGYVGQLSQMQQLIQVVRGTTSDDVRIGEMGGRNVVDSERLKGSEGRVLVIDLEASPSRPRRLSRNIDLEKNKMMVPAPQFGNKEMPREDGFTWRKYGQKQILGSKYPRSYYRCTYQKLYECKAKKQVQRHDHNHNIFEVTYRGNHTCHMSSTTPSSSVQPLQLLLESGISSSSGNSGRWLSSTVNLSLHADGGGGSCGSGGASTTSSRYVADYPVVDMADVMFNSAGSSSGNSMESLFPTTAEDKWEPKEKKN. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02149 343 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 250 IPR044810 GO:0003700
Seca4g02149 343 Pfam WRKY DNA -binding domain 178 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02149 343 Gene3D WRKY domain 167 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g02149 343 ProSiteProfiles WRKY domain profile. 172 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02149 343 MobiDBLite consensus disorder prediction 318 343 - -
Seca4g02149 343 SMART WRKY_cls 177 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02149 343 SUPERFAMILY WRKY DNA-binding domain 175 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g02149 343 Coils Coil 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02149 Seca-Chr4 36595713 36604301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02149 1 329 WRKY Transcription Factor Family AT2G40740 34.104 4.13e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g02149 WRKY 3.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02149 - - gsj:114410180 333.183