Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02147 ATGGCTTCTGCCTCTGCTGCAGGGTCTTCTTCTTGGTCATCTTCAAATTGGGTCTTGGAAAGTGGTGATGTTCCTCATGTTTTGGCTGTTGATGACAACCTCATTGACCGCAAACTTGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAGTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTCTTGGGCTTAACAAGTGGTGAACAGAATAATGCTGTAAGTAGATCCAAAGTAAATTTAGTTATCACAGACTATTGCATGCCAGGGATGACAGGCTATGAGTTACTCAAGAAAATCAAGGAATCATCTGTAATGAAGGAAGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATGTTAAAGCCCCTCAAACAATCTGATGTAAAAAAACTGACCTGTCAGTTAAAGAACTTAGGAAGGTGA 474 0.4135 MASASAAGSSSWSSSNWVLESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNNAVSRSKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFMLKPLKQSDVKKLTCQLKNLGR. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02147 157 ProSiteProfiles Response regulatory domain profile. 26 153 IPR001789 GO:0000160
Seca4g02147 157 Pfam Response regulator receiver domain 27 147 IPR001789 GO:0000160
Seca4g02147 157 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 152 IPR045279 GO:0009736
Seca4g02147 157 FunFam Two-component response regulator ORR5 25 155 - -
Seca4g02147 157 Gene3D - 26 157 - -
Seca4g02147 157 SMART REC_2 25 149 IPR001789 GO:0000160
Seca4g02147 157 CDD REC_typeA_ARR 27 148 - -
Seca4g02147 157 SUPERFAMILY CheY-like 25 152 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02147 Seca-Chr4 36581105 36583308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02147 26 154 Response Regulator Gene Family AT3G56380 74.809 2.71e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g02147 Response_reg 1.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02147 K14492 - gmx:100499827 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01602 4 26010472 26011317 Seca4g02147 4 36581105 36583308 PCT