Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02145 ATGCTCTTGTGTTGTTTCTCTGAGCTCAATTTCACATGGGTGCCTAGAGTTTTGAAAATGCGAGCGTTATCCAAAATGAGAGCTCTTCTTATTGTTTGCTTGTTCTCGCTGCTTCTTGTGGCTGTGGCCGCCGTGAACCCCTCTCTAAACGACGACGTTCTGGGGTTGATTGTGTTCAAAGCTGACATTCAAGATCCGAAGGGAAAGTTGGCATCTTGGAACGAAGACGATGAGAGTGCGTGTGGGGGTAGTTGGGTGGGAGTGAAATGCAACCCTAGATCCAACAGGGTAGTGGAGCTTACACTTGATGGGTTCTCTCTCTCTGGGAAAATTGGTCGAGGCCTTCAAAAATTGCAATTTCTCCGCAAGCTTTCTCTGGCGAACAATAACCTCACAGGGGGCATAAGCCCCAACATTGCTCGTATTGATAACCTTCGGGTCCTTGACTTGAGTGACAACAATCTCTCAGGAGAGATTCCTGATGATTTTTTCAAACAATGTGGGTCTCTCAGGACTGTTTCTTTGGCGAGGAACAAGTTCTCTGGGAGTGTTCCTTCTAGTTTGGGCTCATGCTCAGCTCTTGCTTCTCTTGACATATCTTTTAACCAATTTTCAGGTTCTGTTCCTCCTGGGGTTTGGACTTTGAGTGGACTCAGGTCTCTGGATTTGTCTGCTAACATGTTGGAGGGTGAGATTCCAAAAGGGGTTGAGGCGTTGAAGAATTTGAGGAGCATTAGCTTGGCGAGAAATCGGTTTTCTGGGAAGATTCCAGATGGGTTTGGAAGTTGCTTGCTTTTGAGGTCTATTGATTTCAGTGAGAATGCTTTCTCTGGTAGCATCCCTGGAGATTTGAAGGAACTGGTGCTGTGTAGTTACTTTAGTTTGCGTGGAAACGCTTTCTCAGGAGAGGTTCCTGAGTGGATTGGAGAGATGAAGGGCCTTGAGACATTGGACCTCTCGTGGAATAGATTTTCTGGTGAGGTACCAAACTCTATAGGAAATCTTCAGTCATTGAAGATGTTGAACTTTTCTGCAAATGGTTTCACTGGTAATCTGCCAGAGTCTATGGTGAACTGCACTAACCTTGTGGCCTTGGATGTCAGCCGGAATTCAATGTCCGGAGGCCTTCCATCGTGGATTTTCAAGTCAGATTTGGCACCATCAAACAGAATGAGTGGTAGCGTGAAGAGCCCTTTGTATTCCTTGGCTGAAACTGCGGTTCAAAGTCTTCAAGTTTTGGATTTATCTCACAATGCATTTTCTGGTGAAATCACGTCTGCTATTGCAGGTTTAAGCAGCTTGCAGATTTTGAATTTATCAAATAACTCTCTAGGAGGTCCTATACCAGCTGCAATTGGTGAACTGAAAACATGTTCTAGTCTTGATTTGAGTTATAATAAGCTAAACGGAAGCATACCTTGGGAAATAGGAGGAGCTCTTTCCTTAAAAGTACTAAAATTTGAACATAACTTCCTAGCTGGGAAAATTCCAACCTCAATTGAGAACTGCTCGTCATTAACAACCTTGATTCTGTCCCAGAACAGGCTGAGTGGGTGGATACCTGCAGCAGTTGCAAAGCTTGCTAACCTGCAAATTGTGGACTTATCATTTAACAACCTTACTGGAGCCCTTCCTAAGCAATTGGCCAACCTCCCCAATCTTCTGTCCTTCAATTTATCTCACAACAACCTTCAGGGTGAACTGCCAGCTGGTGGTTTTTTCAACACCATTTCACCTTCTTCTGTTTCTGGCAATCCATTGCTTTGTGGCTCTGCTGTGAACAAATCATGCCCTGCTGTCCTCCCAAAGCCTATTGTTTTGAATCCCAACACTACTACTGACTCTGGCTCAGGTTCACTGCCTCCAACTTTGGGTCACAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTCATTGGCATCACTGTTCTCAACCTCCGTGTTCGGTCCTCCACAGCTCGATCAGCAGCTGCCCTCACATTTTCCGCTGGGGATGAATTCAGCCATTCCCCAACCACAGATGCCAACTCTGGCAAGCTTGTCATGTTTTCAGGTGAGCCTGATTTCAGCTCTGGAGCACATGCCTTGCTTAATAAGGATTGCGAGCTTGGGCGTGGAGGGTTTGGGGCTGTATACCAAACAGTTCTCGGAGATGGGCGTTCAGTTGCTATAAAGAAGCTCACTGTATCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGGGAAGTGAAGAAATTAGGAAAGGTTAGACACCAGAATCTAGTGGAACTTGAAGGTTATTATTGGACTTCATCACTGCAGCTCCTCATATACGAGTATGTCTCTGGTGGTAGTCTGTATAAGCATCTCCATGAAGGTTCAGGTGGAAACTTCCTCTCATGGAATGAGAGGTTTAATGTGATTCTCGGCACAGCAAAGGCCTTGGCTCACTTGCACCACTCCAACATCATTCACTACAACATTAAGTCAACCAATGTCCTTCTTGATAGCTATGGTGAACCTAAAGTAGGCGATTTCGGGCTAGCAAGGCTGTTACCAATGCTCGATCGATATGTTTTGAGCAGCAAAATCCAGAGTGCACTTGGCTACATGGCACCAGAGTTTGCCTGCAAAACGGTGAAAATTACTGAGAAATGTGATGTTTATGGGTTTGGAGTATTGGTTTTGGAGATTGTTACAGGGAAGAGGCCTGTAGAGTATATGGAGGATGATGTGGTGGTACTTTGTGACATGGTAAGAGGGGCATTGGAAGAAGGGAGAGTAGAGGAATGTGTTGATGAGAGGCTACAAGGGAAGTTCCCAGCAGAGGAAGCAATTCCTGTGATGAAATTAGGCTTAATATGTACTTCTCAAGTGCCATCTAATAGACCAGACATGGGAGAGGTAGTTAACATTCTGGAGCTAATAAGATGCCCTTCAGAAGGACAAGAGGAGTTGGGATGA 2976 0.4503 MLLCCFSELNFTWVPRVLKMRALSKMRALLIVCLFSLLLVAVAAVNPSLNDDVLGLIVFKADIQDPKGKLASWNEDDESACGGSWVGVKCNPRSNRVVELTLDGFSLSGKIGRGLQKLQFLRKLSLANNNLTGGISPNIARIDNLRVLDLSDNNLSGEIPDDFFKQCGSLRTVSLARNKFSGSVPSSLGSCSALASLDISFNQFSGSVPPGVWTLSGLRSLDLSANMLEGEIPKGVEALKNLRSISLARNRFSGKIPDGFGSCLLLRSIDFSENAFSGSIPGDLKELVLCSYFSLRGNAFSGEVPEWIGEMKGLETLDLSWNRFSGEVPNSIGNLQSLKMLNFSANGFTGNLPESMVNCTNLVALDVSRNSMSGGLPSWIFKSDLAPSNRMSGSVKSPLYSLAETAVQSLQVLDLSHNAFSGEITSAIAGLSSLQILNLSNNSLGGPIPAAIGELKTCSSLDLSYNKLNGSIPWEIGGALSLKVLKFEHNFLAGKIPTSIENCSSLTTLILSQNRLSGWIPAAVAKLANLQIVDLSFNNLTGALPKQLANLPNLLSFNLSHNNLQGELPAGGFFNTISPSSVSGNPLLCGSAVNKSCPAVLPKPIVLNPNTTTDSGSGSLPPTLGHKRIILSISALIAIGAAAVIVIGVIGITVLNLRVRSSTARSAAALTFSAGDEFSHSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECVDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG. 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02145 991 ProSiteProfiles Protein kinase domain profile. 708 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02145 991 Pfam Leucine rich repeat 144 204 IPR001611 GO:0005515
Seca4g02145 991 Pfam Leucine rich repeat 505 564 IPR001611 GO:0005515
Seca4g02145 991 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Seca4g02145 991 Gene3D Transferase(Phosphotransferase) domain 1 785 989 - -
Seca4g02145 991 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 50 330 - -
Seca4g02145 991 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 331 601 - -
Seca4g02145 991 Gene3D Ribonuclease Inhibitor 387 600 IPR032675 -
Seca4g02145 991 Pfam Protein tyrosine and serine/threonine kinase 710 976 IPR001245 GO:0004672|GO:0006468
Seca4g02145 991 ProSitePatterns Protein kinases ATP-binding region signature. 714 737 IPR017441 GO:0005524
Seca4g02145 991 Gene3D Ribonuclease Inhibitor 50 212 IPR032675 -
Seca4g02145 991 Gene3D Ribonuclease Inhibitor 287 386 IPR032675 -
Seca4g02145 991 ProSiteProfiles Leucine-rich repeat profile. 144 166 IPR001611 GO:0005515
Seca4g02145 991 PRINTS Leucine-rich repeat signature 145 158 - -
Seca4g02145 991 PRINTS Leucine-rich repeat signature 431 444 - -
Seca4g02145 991 SUPERFAMILY RNI-like 208 570 - -
Seca4g02145 991 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 785 986 - -
Seca4g02145 991 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 702 784 - -
Seca4g02145 991 CDD STKc_IRAK 714 980 - -
Seca4g02145 991 SMART LRR_typ_2 527 550 IPR003591 -
Seca4g02145 991 SMART LRR_typ_2 311 335 IPR003591 -
Seca4g02145 991 SMART LRR_typ_2 215 238 IPR003591 -
Seca4g02145 991 SMART LRR_typ_2 431 455 IPR003591 -
Seca4g02145 991 SMART LRR_typ_2 239 263 IPR003591 -
Seca4g02145 991 SMART LRR_typ_2 142 166 IPR003591 -
Seca4g02145 991 SMART LRR_typ_2 407 430 IPR003591 -
Seca4g02145 991 SMART LRR_typ_2 551 575 IPR003591 -
Seca4g02145 991 Pfam Leucine rich repeat N-terminal domain 50 91 IPR013210 -
Seca4g02145 991 Pfam Leucine Rich Repeat 314 335 IPR001611 GO:0005515
Seca4g02145 991 SUPERFAMILY L domain-like 49 285 - -
Seca4g02145 991 SUPERFAMILY Protein kinase-like (PK-like) 711 981 IPR011009 -
Seca4g02145 991 Gene3D Phosphorylase Kinase; domain 1 702 784 - -
Seca4g02145 991 Gene3D Ribonuclease Inhibitor 218 286 IPR032675 -
Seca4g02145 991 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 388 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02145 Seca-Chr4 36511935 36516789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02145 27 991 Receptor kinase-like Gene Family AT3G56370 68.215 0.0 1293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Seca4g02145 PK_Tyr_Ser-Thr 5.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02145 - - gmx:100791629 1603.96