Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02134 ATGTCATTTGGGTTTCTCATGAGATTGTTATCAATCATTGCAGGAGGGGCTTGTGGTTATGGCAATTTATACAGCCAAGGCTATGGGACTAACACTGCAGCACTCAGCACTGCTCTTTTCAACAATGGCTTGAGTTGTGGGTCTTGCTATGAGATGAGATGTGACAGTGACCCTAAATGGTGCCTACCTGGAAGCATAATAGTTACTGCTACAAACTTCTGCCCTCCTAACTTTGCATTGTCTAATAACAATGGTGGTTGGTGCAACCCTCCTCTGCAGCACTTTGATCTTGCTGAGCCTGCTTTCTTACAAATTGCACAATACAAAGCTGGAATTGTTCCTGTTTCCTTCAGAAGAGTTTCTTGTGTGAAGAAAGGAGGAATCAGGTTCACCATCAATGGTCACTCTTACTTTAACTTGGTTCTGATCACAAATGTTGGTGGTGCTGGGGATGTTCATTCAGTGTCCATCAAGGGTTCTAGGACAGGGTGGCAAACAATGTCTAGGAACTGGGGGCAGAATTGGCAGAGCAACTCTTACCTCAATGGCCAGAGCCTCTCTTTCCAGGTCACTACCAGTGATGGCAGGATTGTCACTAGCAACAACATTGTACCTGCTAATTGGCAATTTGGACAGACATTTGAGGGGGCACAGTTTTAG 660 0.45 MSFGFLMRLLSIIAGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDSDPKWCLPGSIIVTATNFCPPNFALSNNNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRIVTSNNIVPANWQFGQTFEGAQF. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02134 219 PRINTS Expansin/Lol pI family signature 110 126 IPR007118 GO:0005576
Seca4g02134 219 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Seca4g02134 219 PRINTS Expansin/Lol pI family signature 36 54 IPR007118 GO:0005576
Seca4g02134 219 PRINTS Expansin/Lol pI family signature 164 178 IPR007118 GO:0005576
Seca4g02134 219 PRINTS Expansin/Lol pI family signature 14 32 IPR007118 GO:0005576
Seca4g02134 219 PRINTS Expansin signature 126 138 IPR002963 GO:0009664
Seca4g02134 219 PRINTS Expansin signature 66 76 IPR002963 GO:0009664
Seca4g02134 219 PRINTS Expansin signature 202 218 IPR002963 GO:0009664
Seca4g02134 219 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Seca4g02134 219 PRINTS Expansin signature 138 159 IPR002963 GO:0009664
Seca4g02134 219 PRINTS Expansin signature 54 65 IPR002963 GO:0009664
Seca4g02134 219 PRINTS Expansin signature 27 41 IPR002963 GO:0009664
Seca4g02134 219 PRINTS Expansin signature 85 102 IPR002963 GO:0009664
Seca4g02134 219 PRINTS Expansin signature 102 115 IPR002963 GO:0009664
Seca4g02134 219 Gene3D - 126 219 IPR036749 -
Seca4g02134 219 SUPERFAMILY Barwin-like endoglucanases 14 145 IPR036908 -
Seca4g02134 219 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 15 127 IPR007112 -
Seca4g02134 219 SUPERFAMILY PHL pollen allergen 124 216 IPR036749 -
Seca4g02134 219 CDD DPBB_EXPA_N 15 122 - -
Seca4g02134 219 Gene3D - 9 122 IPR036908 -
Seca4g02134 219 Pfam Lytic transglycolase 32 117 IPR009009 -
Seca4g02134 219 FunFam Expansin 127 219 - -
Seca4g02134 219 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 137 216 IPR007117 -
Seca4g02134 219 SMART dpbb_1 32 117 IPR007112 -
Seca4g02134 219 Pfam Expansin C-terminal domain 128 205 IPR007117 -
Seca4g02134 219 PANTHER EXPANSIN-A15 14 219 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02134 Seca-Chr4 36134289 36135614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02134 15 219 Expansin Gene Family AT2G40610 83.010 6.45e-131 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02134 - K20628 gmx:547673 431.795