Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02130 ATGACATTCAAGCGCAGGAATGGAGGCCGCAACAAACATGGCCGTGGCCACGTCAAATTCATTCGATGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCAATCAAAAGGTTTCTTGTGAGGAACATTGTTGAACAAGCTGCAGTTAGAGATGTTCAGGAGGCCTGTGTTTATGACCAATACACTCTTCCTAAGCTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCCATCCACTCTCATGTTGTGAGGGTTCGATCTCGCACTGATAGGAGGAAGCGTGACCCCCACAGCGCTTCATCAGGCGCAGGTTTATTTGATTCTCTTTTTAAGGATGATGCACCAAGGCCCGGTCAGCCTGGTCAAGTACCTCGTCCTGCTGGAGTAGGAGCTCCACCCCGTGCCTAA 411 0.5036 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPHSASSGAGLFDSLFKDDAPRPGQPGQVPRPAGVGAPPRA. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02130 136 MobiDBLite consensus disorder prediction 86 136 - -
Seca4g02130 136 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Seca4g02130 136 MobiDBLite consensus disorder prediction 120 136 - -
Seca4g02130 136 PANTHER 40S RIBOSOMAL PROTEIN S26 1 128 IPR000892 GO:0003735|GO:0005840|GO:0006412
Seca4g02130 136 FunFam 40S ribosomal protein S26 1 121 - -
Seca4g02130 136 Pfam Ribosomal protein S26e 1 99 IPR000892 GO:0003735|GO:0005840|GO:0006412
Seca4g02130 136 Gene3D Ribosomal protein S26e 1 106 IPR038551 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02130 Seca-Chr4 36085089 36086848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02130 1 123 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 75.610 3.62e-62 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02130 K02976 - gmx:100781822 191.815