Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02109 ATGGCTTCCTCTTTGTCCAACGGAGACCACAGTGCCGTTCGTTTCCCCTTGTCTCCCTCCACCGCTTTGGTCATTCAGAAAGGTGACATCACCCAATGGTCCATCGATGCTTCCTCCGACGCAATAGTAAATCCAGCAAATGAGAGAATGCTTGGAGGTGGAGGCGCAGACGGAGCCATACATAGGGCTGCTGGTCCAGAACTTCTTGAGGCATGCTACAATGTTCCAGAAGTGAGGCCTGGAATTCGCTGCCCAACAGGGGAAGCAAGGATCACACCGGGTTTTAGATTGCCTGCTTCTCATGTTGTTCATACTGTGGGACCAATCTATGATTCCAACAGTAACCCTGCTGCCTCTCTAGCAAGTGCTTACAGGAATAGTTTGAGGGTTGCAAAAGAGAAAAATATTCAGTATATAGCATTCCCTGCCATATCATGTGGTGTCTTTGGATATCCTTACGATGAGGCTGCTACCATAGCAATTTCTACCATCAAAGAGTTTCGAAATGACTTTAAGGAGGTATTCGATTCCATCTGTTCCCTTTTCTTTATTGGGGTCTGA 561 0.4706 MASSLSNGDHSAVRFPLSPSTALVIQKGDITQWSIDASSDAIVNPANERMLGGGGADGAIHRAAGPELLEACYNVPEVRPGIRCPTGEARITPGFRLPASHVVHTVGPIYDSNSNPAASLASAYRNSLRVAKEKNIQYIAFPAISCGVFGYPYDEAATIAISTIKEFRNDFKEVFDSICSLFFIGV. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02109 186 CDD Macro_OAADPr_deacetylase 23 167 - -
Seca4g02109 186 SUPERFAMILY Macro domain-like 20 171 IPR043472 -
Seca4g02109 186 Gene3D Leucine Aminopeptidase, subunit E, domain 1 3 183 IPR043472 -
Seca4g02109 186 Pfam Macro domain 43 160 IPR002589 -
Seca4g02109 186 SMART YBR022w_8 22 160 IPR002589 -
Seca4g02109 186 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 15 176 - -
Seca4g02109 186 ProSiteProfiles Macro domain profile. 10 186 IPR002589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02109 Seca-Chr4 35799507 35802577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02109 28 133 C2H2 Transcription Factor Family AT5G01310 31.933 6.67e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02109 K23518 - cave:132188147 293.893