Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02088 ATGTCCAGAGAAAGGGAGAGATTGGATGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATCATGTTTCTTCTCCTCAAATGGGAAGAAGACAAATGTTGGGTCCACCTGGAACCCTAAATACCATAACCCCATGTGCAGCATGTAAGCTATTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAACCCCAGAAGTTTGCTTCTGTCCACAAAGTTTTCGGTGCCAGCAACGTCTCAAAGATGCTAATGCAGGAGGTAGCAGAGTATCAGAGAGCAGATGCAGCAAATAGTCTAGTTTATGAGGCTAACGTGAGGCTAAGAGATCCTGTTTATGGATGTATGGGTGCAATTTCTGCTTTGCAACAGCAAGTTCAATCTTTACAAGCTGAACTCAATGCAGTAAGAGCTGAAATACTCAAATACAAACTCAGGGATGCTAACATGATTGTACCCTCTTCTCATGTTGCAATTCTCCCTTCCTCTGTGGCTGTTTCAATTGCTGCTCCACCACCACCTCCACCTCTTCCTCCAACTTCTTCCTCTTCTTCCATGTACAATATCCAACAGAGGGATCCTTCCAATTATAGCAGAATTTCAAGTGATAACATTTCCTATTTTGGTTAA 645 0.4295 MSRERERLDEIGKKIKREGDHVSSPQMGRRQMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMQEVAEYQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKLRDANMIVPSSHVAILPSSVAVSIAAPPPPPPLPPTSSSSSMYNIQQRDPSNYSRISSDNISYFG. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02088 214 ProSiteProfiles LOB domain profile. 43 145 IPR004883 -
Seca4g02088 214 MobiDBLite consensus disorder prediction 187 214 - -
Seca4g02088 214 Coils Coil 124 151 - -
Seca4g02088 214 MobiDBLite consensus disorder prediction 16 35 - -
Seca4g02088 214 MobiDBLite consensus disorder prediction 176 214 - -
Seca4g02088 214 Pfam Lateral organ boundaries (LOB) domain 44 142 IPR004883 -
Seca4g02088 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02088 Seca-Chr4 35406818 35408060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02088 29 173 AS2 family AT2G40470 83.784 8.25e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g02088 LOB 2.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02088 - - lang:109326265 305.834