Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02087 ATGTCCAGGGAAAGGGAGAGATTGGATGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATCATGTTTCTTCTCCTCAAATGGGAAGAAGACAAATGTTGGGTCCGCCTGGAACCCTAAATACCATAACCCCATGTGCAGCATGTAAGCTATTGAGAAGAAGATGCGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAAAAGTTTGCTTCTGTCCACAAAGTTTTCGGTGCCAGCAACGTCTCAAAGATGCTAATGGAGGTAGCAGAGTATCAGAGAGCAGATGCAGCAAATAGTCTAGTTTATGAGGCTAACGTGAGGCTAAGAGATCCTGTTTATGGATGCATGGGTGCAATTTCTGCTCTGCAACAGCAAGTTCAATCTTTACAAGGTGAACTCAATGCAGTAAGAGCTGAAATACTCAAATACAAACTGAGGGAAGCTAACATCATCATACCCTCTTCTTCTCATGTTGCAATTCTCCCTTCCTCTGCTGCTGTTTCAATAATTGCTGCTCCACCACCACCTCCTCCTCCTCCTCTTCCTCCAAGTACTTCTTCCATGTACAATATCCAACAGAGGGATCCCTCCAATTATAGCAGATCAGTTTCAAGTGATAATAACATTTCCTATTTTGGTTAA 654 0.4358 MSRERERLDEIGKKIKREGDHVSSPQMGRRQMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAEYQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQGELNAVRAEILKYKLREANIIIPSSSHVAILPSSAAVSIIAAPPPPPPPPLPPSTSSMYNIQQRDPSNYSRSVSSDNNISYFG. 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02087 217 MobiDBLite consensus disorder prediction 176 217 - -
Seca4g02087 217 MobiDBLite consensus disorder prediction 16 35 - -
Seca4g02087 217 MobiDBLite consensus disorder prediction 190 217 - -
Seca4g02087 217 Pfam Lateral organ boundaries (LOB) domain 44 141 IPR004883 -
Seca4g02087 217 Coils Coil 123 150 - -
Seca4g02087 217 ProSiteProfiles LOB domain profile. 43 144 IPR004883 -
Seca4g02087 217 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02087 Seca-Chr4 35395357 35396786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02087 29 174 AS2 family AT2G40470 83.784 1.83e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g02087 LOB 7.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02087 - - lang:109326265 308.531