Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02062 AGGGCTAGCATCACTCCTGGCACAGTGCTGATTCTTCTTGCCGGCAGATTTAAGGGAAAGAGAGTAGTGTTTCTTAAGCAGCTTCCTTCTGGGTTGCTCCTTGTAACTGGTCCTTTCAAGATCAATGTAGTTCCTTTGAGACGTGTGAATCAGTCCTATGTTATTGCCACGTCCACCAAAGTAGGTGTTTCTGCTGTTAATGTGGATAAATTTGATGACAAGTACTTCTCAAAGGAAGACAAAAATGTACTCCCCCGGGAGAAGAAATATGACCAAAAAACTGTGGATTCTGCCTTGATAAAGGCCATAGAGAATGTTCCTGGCTTGAAAGCTTATCTAGGTGCCAGGTTTTCCTTGAAGGCAGGCATGAAGCCTCATGAGCTAGTCTTCTAG 393 0.4402 RASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINVVPLRRVNQSYVIATSTKVGVSAVNVDKFDDKYFSKEDKNVLPREKKYDQKTVDSALIKAIENVPGLKAYLGARFSLKAGMKPHELVF. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02062 130 FunFam 60S ribosomal protein L6 2 89 - -
Seca4g02062 130 SUPERFAMILY Translation proteins SH3-like domain 2 88 IPR008991 -
Seca4g02062 130 Gene3D - 2 83 IPR014722 -
Seca4g02062 130 PANTHER 60S RIBOSOMAL PROTEIN L6 1 130 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca4g02062 130 Pfam Ribosomal protein L6e 41 82 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca4g02062 130 Pfam Ribosomal protein L6e 78 130 IPR000915 GO:0003735|GO:0005840|GO:0006412
Seca4g02062 130 CDD KOW_RPL6 1 130 IPR041997 -
Seca4g02062 130 ProSitePatterns Ribosomal protein L6e signature. 42 60 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02062 Seca-Chr4 35109581 35110524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02062 1 130 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 71.622 3.46e-64 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02062 K02934 - gmx:100784101 217.238