Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02059 ATGGAGTTGGTTGCGAAGCTTCGCCACTTAGACCTCACCGGCGCTGTCATTTTGGATGCGCGAAAACCCTCCATTCGACCGCCACGCATGCTCGCCAGAGGAAACATCAACACTCCTAACACTAATTTAATTTACACCAACACCAATCGATTATTCGCCCCCAAAAGGCCCAATTCTACTTCCGGTCGTTTAACCACTGTGGCCGTCGAAAACGACTTCGAGTCTCTCTTTTCTGACCCTGAACCTTCTTCGGTTGATAAACGACGTGTCAACAAACAATCGAATGCCGGTGCTTCCAGCGTTTCATCCGGTGTGAAGTTAGAAAACATCAGCAAAACCTATAAGGGTGTCACTGTGTTGAAGGATGTGAGTTGGGAAGTGAAGAAAGGAGAGAAAGTGGGTTTGGTTGGCGTAAACGGTGCGGGTAAGACGACCCAGATGAGGATTATTGCGGGTCTCGAAGACCCGGATTCGGGAAATGTGATAAAGGCCAAACCCAATATGAAAATTGCGTTTTTGAACCAGGAGTTTGAGGTGTCGCTGAGCAGGACGGTGAAGGAGGAGTTTATGAGTGCGTTCAAAGAGGAAATGGAGGTAGCGGCCAAGTTGGAGAAGGTGCAGAAGGCGCTTGAGGGTGCTGTCAACGATATGGAGTTGATGGGAAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGGCGTGCACAGTCTGTGAACTTGGATGTGGTTGATTCAAAGATAAGTAAATTGATGCCTGAACTTGGGTTTGCTCCTGAGGATTCTGATAGGTTGGTGGCTTCTTTTAGTGGGGGGTGGCAGATGAGGATGTGTCTTGGAAAGATTCTACTTCAGGAGCCAGATTTATTATTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACTATTGAGTGGCTTGAAGAGTATCTTAACAAACAGGATGTGCCAATGGTTATCATTTCCCATGACAGAGCTTTTCTTGATCAGCTGTGTACGAAAATTGTGGAAACTGAAATGGGTGTGTCCAGGACATTTGAGGGAAATTATTCTCAGTTTGTAGTTTCAAAGGCAGCATGGATTGAAGCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACAAAAGACCTGATAAGTAGGTTAGGTGCTGGAGCAAATTCTGGCCGAGCTTCATCTGCTGAGAAGAAGCTGGAGAGACTTCAGGAAGAGGAACTAGTAGAGAAGCCATTTGAACGAAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTCACAATTAAGAGCTTGCAATTTGGCTTTGAGGATGAGATACTTCTCAACAAGGCAAATCTTACAATTGAAAGAGGAGAAAAAATTGCCATTCTTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTAGAGAAGCCAACTGGGGGTGAAGTGATTATTGGAGAGCATAATGTATTACCTAACTATTTTGAGCAAAATCAGGCTGAGGCACTTGATCTGGACAAGACAGTGCTTCAGACAGTAGAAGAAGCTGCAGAGGACTGGAGGATTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGAAAAGTTTCCCTATTGAGTGGTGGTGAGAAGGCGCGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAATGAATACCAAGGCACTGTTATCACAGTATCTCATGATCGATACTTTATAAAGCAGATAGTTAATAGAGTGATAGAAGTTAAAGATGGTACTTTACAGGATTATGCAGGCGATTACAATTATTATTTAGAGAAGAATCTTGATGCGAGGGAAAGAGAGCTTGAACGCGAGGCAGATCTTGAGGACAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCGAAGGTGAACTTTTGTTAA 2019 0.4354 MELVAKLRHLDLTGAVILDARKPSIRPPRMLARGNINTPNTNLIYTNTNRLFAPKRPNSTSGRLTTVAVENDFESLFSDPEPSSVDKRRVNKQSNAGASSVSSGVKLENISKTYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEDPDSGNVIKAKPNMKIAFLNQEFEVSLSRTVKEEFMSAFKEEMEVAAKLEKVQKALEGAVNDMELMGRLLDEFDLLQRRAQSVNLDVVDSKISKLMPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQFVVSKAAWIEAQYAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVTIKSLQFGFEDEILLNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPTGGEVIIGEHNVLPNYFEQNQAEALDLDKTVLQTVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVITVSHDRYFIKQIVNRVIEVKDGTLQDYAGDYNYYLEKNLDARERELEREADLEDKAPKVKAKSKMSKVNFC. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02059 672 MobiDBLite consensus disorder prediction 78 102 - -
Seca4g02059 672 CDD ABCF_EF-3 105 335 - -
Seca4g02059 672 Pfam ABC transporter 120 295 IPR003439 GO:0005524
Seca4g02059 672 ProSitePatterns ABC transporters family signature. 267 281 IPR017871 GO:0005524|GO:0016887
Seca4g02059 672 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 432 647 IPR003439 GO:0005524
Seca4g02059 672 Pfam ABC transporter 334 421 IPR032781 -
Seca4g02059 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 351 IPR027417 -
Seca4g02059 672 Gene3D - 394 659 IPR027417 -
Seca4g02059 672 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 105 363 IPR003439 GO:0005524
Seca4g02059 672 SMART AAA_5 129 344 IPR003593 GO:0016887
Seca4g02059 672 SMART AAA_5 456 624 IPR003593 GO:0016887
Seca4g02059 672 FunFam Putative ABC transporter ATP-binding component 106 390 - -
Seca4g02059 672 Pfam ABC transporter 447 579 IPR003439 GO:0005524
Seca4g02059 672 FunFam ABC transporter ATP-binding protein 392 659 - -
Seca4g02059 672 ProSitePatterns ABC transporters family signature. 551 565 IPR017871 GO:0005524|GO:0016887
Seca4g02059 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 637 IPR027417 -
Seca4g02059 672 Gene3D - 102 386 IPR027417 -
Seca4g02059 672 CDD ABCF_EF-3 432 624 - -
Seca4g02059 672 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 104 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02059 Seca-Chr4 35061878 35066916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02059 429 649 Calmodulin-binding Proteins AT2G36910 25.101 6.60e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02059 - - gmx:100796907 1095.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02059 4 35061878 35066916 Seca4g02059 4 35061878 35066916 ECH