Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02057 ATGGAGGACTGTTATTTTGTAAACCCTAATATTAATCCTAACCCTTATAATTACTCTGCCGTAAATATGGCTCCTCCTCCTTCTTCTGAGTTCGTTTTATCTGATTATCTCATGCTCGATGATCATGATCAAGAGTCTTGGTCGCATAGCACAGAAACTGAATCATCAGAGAAAGATGCTACTCATCATGGATTAATTGGTGATGCGGCAATTACCTCTTCCAACAATAATAACATGACTAAGCGAAACAATGGAGAAATGAGCGGAAGGATCACGTTTAGAACCAGATCGCAGCTTGAGATTATGGATGATGGATACAAATGGAGGAAATACGGGAAGAAGTCAGTGAAGAACAGTCCGAATCCAAGGAACTACTACAAGTGTTCAAGTGAAGGATGTGGTGTGAAGAAAAGAGTGGAAAGGGATAGAGAAGACTGGAGCTACGTGTTAACAAGTTATGAAGGTGTGCACAATCATGAGAGCCCCTACTACGCCCAAATGCATTCTAATATATTATTATGA 522 0.4004 MEDCYFVNPNINPNPYNYSAVNMAPPPSSEFVLSDYLMLDDHDQESWSHSTETESSEKDATHHGLIGDAAITSSNNNNMTKRNNGEMSGRITFRTRSQLEIMDDGYKWRKYGKKSVKNSPNPRNYYKCSSEGCGVKKRVERDREDWSYVLTSYEGVHNHESPYYAQMHSNILL. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02057 173 FunFam WRKY transcription factor 57 88 162 - -
Seca4g02057 173 MobiDBLite consensus disorder prediction 68 86 - -
Seca4g02057 173 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 47 163 IPR044810 GO:0003700
Seca4g02057 173 MobiDBLite consensus disorder prediction 67 86 - -
Seca4g02057 173 SMART WRKY_cls 102 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02057 173 SUPERFAMILY WRKY DNA-binding domain 94 162 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g02057 173 Pfam WRKY DNA -binding domain 103 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02057 173 Gene3D WRKY domain 89 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g02057 173 ProSiteProfiles WRKY domain profile. 97 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02057 Seca-Chr4 35017843 35019727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02057 7 167 WRKY Transcription Factor Family AT5G64810 44.571 9.92e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g02057 WRKY 3.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02057 - - gmx:100127396 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02057 4 35017843 35019727 Seca4g02057 4 35017843 35019727 ECH
Seca8g03118 8 88478871 88480417 Seca4g02057 4 35017843 35019727 PCT