Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02049 ATGAAATCCCTGTACAGCAGCAGCAAGTCTTTCTCGCTCGCGTTCAACCTCTTGCTCTTGCTCCCTCTGTTTCTTCCATGCTGGTGTGCTGCTTCGCCTTCCAGAGACCCCACAGAGCAGCTGATCAACTTCAAAGCTACTCTCCCGAACCCAAACCTGCTCCCGAACTGGGTCCCGAACCAAAACCCATGTTCATTCACGGGGGTTACCTGCAACCAAACCATGGTCACTTCCATAGACCTCACCTCCTTAGCCCTAAACACAAACCTCACCATCGTCGCAACCTACCTTCTCACCCTCGACCACCTCCAAGTCCTCACACTCAAATCCACCAACCTCACTGCTTCCGCCATTTCCGTTTCCCACAGTGTCAAGTGCTCCTCCTCACTCACCACCATAGATCTATCCCAAAACATCTTGTCTGGATCCTTTTCCACCTTCTCCTTTCTTGCTTCATGCTCCAACCTCCAATCCCTCAACCTCTCCAACAACCTTCTCGAATTCGATTCACCGCGTTGGAGTTTTCCTTCTAGCCTCCAAGTCTTGGACCTTTCATACAACAAGTTTTCAGGTCCCAGTGTTTTCCCTTGGGTCCTGACCCCTGGTTTGCAGCACTTGGCTCTCAAAGGAAACAAAATCACCGGCGAAATCGACTTCTCCGGCACCGCTCTCCGGTATCTGGACCTTTCCTCCAACAACTTCTCCGTCTCCATTCCTTCCTTCGGTGAGTGTTCTGCACTTCAACACCTTGACCTCTCCACCAACAACTACTTCGGCGACATTGCCCGCACCATCTCCCCTTGCAAAAACCTCATCCACCTCAACCTCTCCGGTAACCAGTTCTCCGGTCCGGTTCCATCCCTCCCCTCCGGTTCCCTGCAGTTCCTCTACCTCGCCGCAAATCACTTCCATGGCCAGATTCCGAAGAGCCTCACTGACCTCTGCTCGACTCTGGTAGAACTCGATCTCTCCTCCAACAACCTAACAGGCGTCGTCCCCGGCGAGTTAGGCGCGTGTTCCACCTTGGAATCCTTCGACATCTCTAGTAACAAGTTCACCGGCGCGTTGCCGGTGGAGGTGTTCACGGAGATGAGTAGCCTGAGAGACCTGGCGGTGTCGTTCAACGAGTTCGTTGGGCCTCTTCCGGTGTCTCTGGTTTCGAAGCTGCTGAGTTTGGAATCGCTGGATCTGAGCTCGAACAACTTGAGCGGGCCAATCCCTAGTGGACTGTGTGAAGATCCCAGGAATAATTTGAAGGAACTATACCTACAGAATAACCGCTTCACGGGTTTTATTCCACCCACGCTTAGCAACTGTTCTCACCTCGTTGCCTTGGACTTGAGCTTCAACTTCCTCACGGGGACTATCCCTCCGAGTTTAGGGTCACTTTCCAGGTTGCGTGATTTGATCATGTGGCTCAACCAGCTCCAGGGGGAGATTCCCCAAGAGCTGAGTCAGATGCAGAGCCTCGAGAATTTGATCCTGGACTTCAACATGTTGAGTGGGAGCATTCCCTCTGGGCTTATGAATTGCACTAAGCTCAATTGGATCTCCCTCTCTAACAACAGGCTCAGTGGTGAGATTCCAGCGTGGATTGGGAAGCTTTCCAACCTGGCAATATTGAAGCTGAGCAATAACTCCTTCTCCGGGAAAATTCCTCCGGAGCTTGGGGATTGTCCTAGCTTGATATGGTTGGATCTGAATACCAATTCGCTGAGTGGGTCAATCCCTCCTGTGTTGTTCAAGCAATCAGGGAAGATCGCGGTTAATTTCATACGCGGGAAGACATATGTGTACATAAAGAATGATGGTAGCAGGGAGTGCCATGGTGCTGGGAACTTGCTGGAATTTGCAGGGATCAGTCAGCAGCAGTTGAATAGGATTTCAACTAGGAACCCTTGCAATTTTACTAGAGTGTATGGAGGTAAGCTGCAACCAACGTTTAACCATAATGGTTCCATGATCTTTTTGGATATCTCCCACAACATGTTGTCTGGTACCATTCCTAAGGAAATTGGCGAAATGTACTATTTGTACATTTTGAATTTGGGTCACAATAACATATCTGGAGACATACCTCAAGAGCTTGGCAGGATGAAGAACCTTAACATACTTGATCTCTCCAACAATAGGCTCCAAGGCCCAATTCCACAAGCCTTGACGGGTCTATCCTTGCTCACTGAGTTGGACTTGTCGAACAACTATCTCACCGGAATAATTCCTGAATCCGGGCAATTTGATACATTTCCAGCAAGCAGGTTCCAGAACAATTCTGGTCTTTGTGGGGTTCCTCTTGCTCCGTGTGGAGTGGTTTCAGGAACCAGTGCAGATGCTCAAAACCAGAAGGCTCGTCATAAGAATCATGCATCTCTTGCGGGGAGTGTGGCCATGGGATTGTTGTTCTCTGTATTCTGCATCTTTGGTTTGATCATAGTTGCTATTGAGACCAGAAAGAGGAGGAAGAAGAAGGAGGCTGCTATTGATGGCTACATTGACGGAAATTCTCATTCGGGTACGGCCAATGTCAGCTGGAAGTTGACTAGTGCCCGTGAAGCACTGAGCATAAACCTTGCAACGTTTGAGAAGCCCCTCAGGAAGCTTACTTTTGCTGATCTTCTTGAAGCAACAAATGGCTTTCACAATGACAGTCTTATTGGTTCAGGCGGTTTTGGGGACGTTTACAAGGCTCAGTTGAAGGATGGAAGTGTTGTGGCCATCAAGAAACTGATTCATGTCAGTGGACAAGGGGACAGGGAGTTCACTGCTGAGATGGAAACCATTGGGAAAATCAAGCACAGGAACCTTGTTCCCCTTCTGGGCTACTGCAAGGTTGGGGAAGAAAGACTCTTGGTTTATGAGTACATGAAGTATGGAAGTCTAGAAGATGTTCTGCATGACCCGAAGAAAGCAGGGATCAAGCTGAGCTGGGCAGTGAGGAGGAAGATTGCAATTGGAGCTGCTAGGGGATTGGCTTTTCTTCACCACAATTGTATCCCCCACATCATTCACAGGGACATGAAATCAAGCAATGTGTTGCTAGATGAAAATCTGGAAGCCAGGGTCTCTGATTTTGGAATGGCTAGGCTGATGAGTGCTATGGATACCCATTTGAGCGTCAGCACACTAGCAGGAACACCGGGCTACGTTCCTCCCGAGTACTACCAGAGCTTCAGATGCTCTACTAAAGGTGATGTTTATAGTTACGGCGTTGTTTTGCTGGAGCTGCTGACAGGGAAAAGGCCAACGGACTCGGCTGATTTTGGTGATAACAATCTTGTGGGGTGGGTGAAACAACATGCAAAACTGAAAATAAGTGATGTTTTTGACCCAGAGCTCATGAAAGAAGACCCCAATCTAGAGATTGAGCTTTTGCAGCACTTAAAGGTGGCTTGTGCTTGCTTGGATGATAGACATTGGCGGCGACCTACAATGATTCAAGTCATGGCAATGTTCAAGGAAATCCAAGCGGGGTCTGGGATGGATTCTCAATCTACCATAGCCACCGAAGATGAAGGTTTTAATGCTGTTGAAATGGTAGAGATGAGCATTAAAGAAGCCCCTGAGTTGAGCAAGCATTAG 3579 0.4878 MKSLYSSSKSFSLAFNLLLLLPLFLPCWCAASPSRDPTEQLINFKATLPNPNLLPNWVPNQNPCSFTGVTCNQTMVTSIDLTSLALNTNLTIVATYLLTLDHLQVLTLKSTNLTASAISVSHSVKCSSSLTTIDLSQNILSGSFSTFSFLASCSNLQSLNLSNNLLEFDSPRWSFPSSLQVLDLSYNKFSGPSVFPWVLTPGLQHLALKGNKITGEIDFSGTALRYLDLSSNNFSVSIPSFGECSALQHLDLSTNNYFGDIARTISPCKNLIHLNLSGNQFSGPVPSLPSGSLQFLYLAANHFHGQIPKSLTDLCSTLVELDLSSNNLTGVVPGELGACSTLESFDISSNKFTGALPVEVFTEMSSLRDLAVSFNEFVGPLPVSLVSKLLSLESLDLSSNNLSGPIPSGLCEDPRNNLKELYLQNNRFTGFIPPTLSNCSHLVALDLSFNFLTGTIPPSLGSLSRLRDLIMWLNQLQGEIPQELSQMQSLENLILDFNMLSGSIPSGLMNCTKLNWISLSNNRLSGEIPAWIGKLSNLAILKLSNNSFSGKIPPELGDCPSLIWLDLNTNSLSGSIPPVLFKQSGKIAVNFIRGKTYVYIKNDGSRECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGTIPKEIGEMYYLYILNLGHNNISGDIPQELGRMKNLNILDLSNNRLQGPIPQALTGLSLLTELDLSNNYLTGIIPESGQFDTFPASRFQNNSGLCGVPLAPCGVVSGTSADAQNQKARHKNHASLAGSVAMGLLFSVFCIFGLIIVAIETRKRRKKKEAAIDGYIDGNSHSGTANVSWKLTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKLSWAVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNLEIELLQHLKVACACLDDRHWRRPTMIQVMAMFKEIQAGSGMDSQSTIATEDEGFNAVEMVEMSIKEAPELSKH. 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02049 1192 Pfam Protein kinase domain 879 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02049 1192 PRINTS Leucine-rich repeat signature 699 712 - -
Seca4g02049 1192 PRINTS Leucine-rich repeat signature 318 331 - -
Seca4g02049 1192 FunFam Brassinosteroid LRR receptor kinase 955 1156 - -
Seca4g02049 1192 Pfam Leucine rich repeat N-terminal domain 39 72 IPR013210 -
Seca4g02049 1192 ProSiteProfiles Protein kinase domain profile. 879 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02049 1192 Gene3D - 590 650 - -
Seca4g02049 1192 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 415 504 - -
Seca4g02049 1192 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 466 1152 - -
Seca4g02049 1192 Pfam Leucine rich repeat 678 736 IPR001611 GO:0005515
Seca4g02049 1192 Pfam Leucine rich repeat 417 475 IPR001611 GO:0005515
Seca4g02049 1192 Pfam Leucine rich repeat 513 572 IPR001611 GO:0005515
Seca4g02049 1192 Gene3D Phosphorylase Kinase; domain 1 839 954 - -
Seca4g02049 1192 Pfam Leucine Rich repeats (2 copies) 223 261 IPR025875 -
Seca4g02049 1192 SUPERFAMILY L domain-like 646 778 - -
Seca4g02049 1192 Pfam Brassinosteroid receptor island domain 585 649 IPR045381 -
Seca4g02049 1192 ProSiteProfiles Leucine-rich repeat profile. 223 245 IPR001611 GO:0005515
Seca4g02049 1192 Gene3D Ribonuclease Inhibitor 41 768 IPR032675 -
Seca4g02049 1192 Gene3D Transferase(Phosphotransferase) domain 1 955 1156 - -
Seca4g02049 1192 CDD STKc_IRAK 885 1154 - -
Seca4g02049 1192 FunFam Leucine-rich repeat receptor protein kinase EMS1 505 592 - -
Seca4g02049 1192 SMART LRR_typ_2 389 413 IPR003591 -
Seca4g02049 1192 SMART LRR_typ_2 487 511 IPR003591 -
Seca4g02049 1192 SMART LRR_typ_2 560 583 IPR003591 -
Seca4g02049 1192 SMART LRR_typ_2 268 295 IPR003591 -
Seca4g02049 1192 SMART LRR_typ_2 314 338 IPR003591 -
Seca4g02049 1192 SMART LRR_typ_2 535 559 IPR003591 -
Seca4g02049 1192 SMART LRR_typ_2 417 439 IPR003591 -
Seca4g02049 1192 SMART LRR_typ_2 699 722 IPR003591 -
Seca4g02049 1192 SMART LRR_typ_2 723 746 IPR003591 -
Seca4g02049 1192 SMART serkin_6 879 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02049 1192 Coils Coil 473 493 - -
Seca4g02049 1192 FunFam serine/threonine-protein kinase BRI1-like 2 840 954 - -
Seca4g02049 1192 SUPERFAMILY Protein kinase-like (PK-like) 865 1157 IPR011009 -
Seca4g02049 1192 ProSitePatterns Protein kinases ATP-binding region signature. 885 908 IPR017441 GO:0005524
Seca4g02049 1192 SUPERFAMILY RNI-like 292 579 - -
Seca4g02049 1192 Pfam Leucine Rich Repeat 270 296 IPR001611 GO:0005515
Seca4g02049 1192 Pfam Leucine Rich repeat 315 330 IPR001611 GO:0005515
Seca4g02049 1192 Pfam Leucine Rich repeat 390 404 IPR001611 GO:0005515
Seca4g02049 1192 FunFam Serine/threonine-protein kinase BRI1-like 1 592 649 - -
Seca4g02049 1192 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 172 414 - -
Seca4g02049 1192 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1001 1013 IPR008271 GO:0004672|GO:0006468
Seca4g02049 1192 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 646 768 - -
Seca4g02049 1192 SUPERFAMILY L domain-like 60 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02049 Seca-Chr4 34892858 34896436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02049 31 1188 Receptor kinase-like Gene Family AT4G39400 68.968 0.0 1544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca4g02049 Pkinase 9.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02049 K13415 - gmx:100499629 1838.54