Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02044 ATGGGATGCGTTTTTGGCAAATTCTCTTCACCCCCTCGCAAAGATGAGAGGTCGAAACGCCACAGACACAAAGGAAATGTGAAGAGAGTAGCCAGCCGGAAGGGTTCGAGAAAAGAGGGGTTAAAGAGGGAAATTCGGATTCAGAGACCAAGAGTCAGTGTTCATAATAATAATAATAAGGATTCTGCTGCAGAGAACAATGCACAGAACATTTCAGGTGGCGGTGCAGTGAGAGGAGAAGAAAAAGAAAAACCTGTTGCTAGAGAAGAGAACAAGATTACTAGATCATATGATCTTGGGGACGGTTGGCCAAAGTGGTTAGTTGATAATATTCCCAAAGATGTTTTGGATACTCTGGTTCCTAAGAGCGCTGATTCCTATGTAAAACTTGCCAAGATAGGACGTGGAACATATAGTAATGTGTATAAGGCCAGAGAAAAGGGCACAGGAAAGATTGTTGCTTTGAAGAAGGTACGCTTTGACACAACAGATTCTGAAAGTATCAAGTTTATGGCAAGAGAGATCATGGTACTGCAGAAGCTGGATCATCCCAATGTCATCAAGCTTGAAGGACTAGCAACATCAAGGATGCAATATAGTCTTTATCTAGTTTTTGATTTCATGGAGTCTGATCTCACCCGAATTATTTCCCGACCTGGGGAGAGACTCACAGAACCACAGATCAAGTGCTTTATGCAGCAGCTGCTTTCTGGCCTCCAACATTGTCACGATAGAGGAGTTATGCACCGAGATATTAAAGCTTCAAACTTGTTAATAGACAAAAAAGGGGTCCTGAAAATTGCAGATTTTGGGCTTGCAAAGTCTTTTGCTGTTAAACATGAAGCACCTCTTACAAATAGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACTGATTATGATTTTGGCATTGATCTCTGGAGCGCAGGATGCTTATTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCAGGCAGGACAGAGGTTGAACAGCTTCACATGATCTTCAAACTTTGTGGTTCTCCTTCAGAGAATTACTGGAGAAAACTGAAGCTAACCACAAGCTACCGGCCAGCACAACATTACAAGCCTAGCTACCGAGAGGCCTTCAAGAATTTTCCCTCCTCTTCCTATGATCTGTTGGCCACACTTCTTGATCTTGACCCTGCCCATCGTGGCACTGCTGCCTCTGCTCTCCGAAGTGAATTCTTTAAATCCAGTCCATTACCGTGCCATCCTTCAGCTCTACCAGTGATCTACAAAGACGAGGATGAACGCTTACAAATTAAGAGACGCAAAAGGCAAAGAGCTTTGAAAAGAAGGCAACAATCTCAACCAAGTACAAATGATGTCATTCATTCAGGAAGGAACCAATACCAAACTGATTCAAAATCGTCAAAAGAGCTTTGGGAGGAGAAGAATATTATTGAGCAACACAAGGAAGTGGGCAATAGTGCAAGCAGTACATCGTCAGGGTCAAGACTGGTTCTTAACGAAGGGAGCAGCAGCATGAATGCATCTATATCTCCACCTTTTGGCGAAGGCCATCATCCTAATGCTCTAAAGAACTATAGTGCTCTCTTACAGGCCTCTAAGGTAGAAGTAGAAGGCAATGACTTTGCACAGCTTCGCAGGTCCTTCTCCACATTCGATTATCGACTTGATCCAGACAAGATAGCAAAACTTTCTGGATTAACTAAAGAGATTTAA 1725 0.4284 MGCVFGKFSSPPRKDERSKRHRHKGNVKRVASRKGSRKEGLKREIRIQRPRVSVHNNNNKDSAAENNAQNISGGGAVRGEEKEKPVAREENKITRSYDLGDGWPKWLVDNIPKDVLDTLVPKSADSYVKLAKIGRGTYSNVYKAREKGTGKIVALKKVRFDTTDSESIKFMAREIMVLQKLDHPNVIKLEGLATSRMQYSLYLVFDFMESDLTRIISRPGERLTEPQIKCFMQQLLSGLQHCHDRGVMHRDIKASNLLIDKKGVLKIADFGLAKSFAVKHEAPLTNRVVTLWYRAPELLLGSTDYDFGIDLWSAGCLLAEMFVGRPIMPGRTEVEQLHMIFKLCGSPSENYWRKLKLTTSYRPAQHYKPSYREAFKNFPSSSYDLLATLLDLDPAHRGTAASALRSEFFKSSPLPCHPSALPVIYKDEDERLQIKRRKRQRALKRRQQSQPSTNDVIHSGRNQYQTDSKSSKELWEEKNIIEQHKEVGNSASSTSSGSRLVLNEGSSSMNASISPPFGEGHHPNALKNYSALLQASKVEVEGNDFAQLRRSFSTFDYRLDPDKIAKLSGLTKEI. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02044 574 MobiDBLite consensus disorder prediction 485 514 - -
Seca4g02044 574 PANTHER CELL DIVISION PROTEIN KINASE 125 415 - -
Seca4g02044 574 MobiDBLite consensus disorder prediction 16 31 - -
Seca4g02044 574 Gene3D Phosphorylase Kinase; domain 1 116 209 - -
Seca4g02044 574 MobiDBLite consensus disorder prediction 32 50 - -
Seca4g02044 574 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Seca4g02044 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Seca4g02044 574 SMART serkin_6 127 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02044 574 ProSiteProfiles Protein kinase domain profile. 127 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02044 574 MobiDBLite consensus disorder prediction 437 519 - -
Seca4g02044 574 MobiDBLite consensus disorder prediction 1 89 - -
Seca4g02044 574 FunFam Putative serine/threonine-protein kinase 210 447 - -
Seca4g02044 574 MobiDBLite consensus disorder prediction 446 469 - -
Seca4g02044 574 MobiDBLite consensus disorder prediction 470 484 - -
Seca4g02044 574 Pfam Protein kinase domain 127 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02044 574 SUPERFAMILY Protein kinase-like (PK-like) 122 416 IPR011009 -
Seca4g02044 574 MobiDBLite consensus disorder prediction 51 73 - -
Seca4g02044 574 Gene3D Transferase(Phosphotransferase) domain 1 210 454 - -
Seca4g02044 574 FunFam probable serine/threonine-protein kinase At1g54610 114 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02044 Seca-Chr4 34767064 34771490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02044 122 451 Core Cell Cycle Gene Families AT5G10270 47.443 2.60e-104 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca4g02044 Pkinase 4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02044 K08819 - gmx:100782603 684.1