Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02041 ATGGATTCTGCAAGGAGTTGGTTGCAGAAGTTTCAACCACGAGATAGAATGAGGGCCCCTACGAGGAGGAAGGATGATGTTAATGGCGGAAACGAAGTCTCAAATGAGCCCCTGGATGAAGATGCTCTTTCCAATATCACAAAGCAGAAGGTTGCAGCAGCCAAACAATATATTGAGAACCACTACAAGGAGCAAATGAAGAATCTCCAGGAAAGGAAGGAGCGTCGAATCATCTTAGAAAAGAAGTTAGCTGATGCTGATGTTTCCGAGGAGGATCAAAACAATCTGTTGAAATTTTTAGAGAAAAAGGAAACTGAGTATATGCGTCTTCAGAGGCACAAAATGGACGTTGATGATTTTGAGTTATTGACCATGATTGGAAAAGGTGCATTTGGGGAGGTTAGAGTCTGTAGGGAAAAGACTACAGGTCATGTATATGCGATGAAAAAGCTAAAAAAGTCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGTATAGTCAAACTTTATTGTTCTTTCCAAGATGAAGAGTATCTGTATCTTATTATGGAGTATCTACCGGGCGGGGATATGATGACTCTACTCATGAGAAAGGATACTTTGACCGAAGATGAAGCCCGATTTTATGTAGGAGAAACAGTTCTGGCTATTGAATCTATACACAAACACAATTATATACATAGGGATATTAAGCCCGATAACTTATTACTTGATAGATATGGACATGTGAGACTATCAGATTTTGGACTATGTAAACCATTAGACTGTAGTACACTTGAAGAAGCAGATTTTTCTATTGGCCAAAATGCTAATGGATCTATGCAGAATGAAGAACGTACAGGTCCAAAACGTACACAACAAGAACAACTAGAAAACTGGCAGAAGAACAGAAGGACGCTTGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGAATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTAGTGGGATATCCGCCATTTTATTCCGATGATCCGATGTCAACATGTAGGAAGATAGTAAATTGGAGATCTCACTTGAAATTTCCCGAAGAAGCAAGGCTATCTCTAGAGGCCAAAGATCTTATAAGTAAGCTATTGTGTAATGTCAACCAGAGGTTGGGGTCAAATGGTGCAGATGAAATAAAGGTGTTGTATGATGTGTCCTTTCCTAATTCTTAA 1272 0.3962 MDSARSWLQKFQPRDRMRAPTRRKDDVNGGNEVSNEPLDEDALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRIILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMDVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHVRLSDFGLCKPLDCSTLEEADFSIGQNANGSMQNEERTGPKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRSHLKFPEEARLSLEAKDLISKLLCNVNQRLGSNGADEIKVLYDVSFPNS. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02041 423 Gene3D Transferase(Phosphotransferase) domain 1 206 417 - -
Seca4g02041 423 MobiDBLite consensus disorder prediction 9 30 - -
Seca4g02041 423 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02041 423 ProSiteProfiles Protein kinase domain profile. 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02041 423 CDD MobB_NDR_LATS-like 54 115 - -
Seca4g02041 423 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Seca4g02041 423 SMART serkin_6 120 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02041 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Seca4g02041 423 MobiDBLite consensus disorder prediction 281 303 - -
Seca4g02041 423 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 413 - -
Seca4g02041 423 Gene3D Phosphorylase Kinase; domain 1 110 205 - -
Seca4g02041 423 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Seca4g02041 423 SUPERFAMILY Protein kinase-like (PK-like) 101 412 IPR011009 -
Seca4g02041 423 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Seca4g02041 423 FunFam Non-specific serine/threonine protein kinase 314 418 - -
Seca4g02041 423 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02041 Seca-Chr4 34739733 34748892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02041 1 414 AGC Kinase Gene Family AT2G20470 80.378 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Seca4g02041 Pkinase 2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02041 K08790 - gmx:100783286 773.852