Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02034 ATGTGTGTGTTAAAGGTGGCGAATTCTAGAGACAAAGTTGACGAAAGAGAATTCCATGAAGGGGCATTGTCAATGCAAATGATGTTTCCAGGTATGAACAGAGAGAGGGAGATGTCTGCCATGGTCTCAGCTTTGACCCACATAGTCTCCGGAGATGTTCCAACCGCTGGTGATTATACTGTTCCTGATCCTGATCCTGATCCTGATCAAGATCAACCAAGTGCAATTGCAGAAGTTGTTACACCAAACAAGCCTTCTTCTCCTTCTGTAACAACACCAACACAATCTTTGTCTTCTTCTCTAAAAAGAAGTAGGGAAGATGACAGATCCTTCTCACACTCATCCCCTGCTATGACAACAGTTGATGTATGGAATGCAGTTGTGGAATGTTCAAGCAGTAGCACAACAAGAAGAGTAACTGGGCAAATGGGAAATGCTTTATATGAATACAGAACAACAGAGAATGTGGTGAGAGAAGAAGGAGGAAGGAGAAAATACAGAGGTGTGAGACAGAGACCATGGGGGAAATGGGCTGCAGAGATTAGAGACCCATTCAAAGCAGCAAGAGTGTGGCTTGGCACATTTGAAACAGCTGAAGCAGCTGCTAGAGCCTACGATGAAGCTGCACTGCGTTTTAGAGGCAACAAAGCTAAACTCAATTTCCCTGAAAATGTCACTCTTCGCCAACCTCCTCCACCTACCCAATTGAGCATTTCCAATTCTCCCACTTCCATTTCAACCTCCACCGACCCAATTGTTCATACTGAAGCTCTTCCTTCTTCTCAGATTTCAAGCAATTTTTATGAGTATTTTCAGCTCCCAGGCTTCTCCAGGAACCTCTATGGCTTTGATGATCACATGATTATGACATCTACAGTGGCTTCTCATCTTCAATCTTCGTCGTCGCCACCACCACCACCACCTTCTTCTGCCTTTGCTTCCTCTATTACTTCTCCGCAGGTCACTGCCCCTCTTCCTTCGTTTTATTCTACCCAGTTGCCGCCATGGTCAACTTCTTCTGGGTATAGCTCTTCTTCCTCAGGATGA 1047 0.4499 MCVLKVANSRDKVDEREFHEGALSMQMMFPGMNREREMSAMVSALTHIVSGDVPTAGDYTVPDPDPDPDQDQPSAIAEVVTPNKPSSPSVTTPTQSLSSSLKRSREDDRSFSHSSPAMTTVDVWNAVVECSSSSTTRRVTGQMGNALYEYRTTENVVREEGGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPPPPTQLSISNSPTSISTSTDPIVHTEALPSSQISSNFYEYFQLPGFSRNLYGFDDHMIMTSTVASHLQSSSSPPPPPPSSAFASSITSPQVTAPLPSFYSTQLPPWSTSSGYSSSSSG. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02034 348 SMART rav1_2 165 228 IPR001471 GO:0003700|GO:0006355
Seca4g02034 348 CDD AP2 165 224 IPR001471 GO:0003700|GO:0006355
Seca4g02034 348 MobiDBLite consensus disorder prediction 230 249 - -
Seca4g02034 348 ProSiteProfiles AP2/ERF domain profile. 165 222 IPR001471 GO:0003700|GO:0006355
Seca4g02034 348 Pfam AP2 domain 165 214 IPR001471 GO:0003700|GO:0006355
Seca4g02034 348 MobiDBLite consensus disorder prediction 76 100 - -
Seca4g02034 348 MobiDBLite consensus disorder prediction 329 348 - -
Seca4g02034 348 MobiDBLite consensus disorder prediction 296 317 - -
Seca4g02034 348 FunFam Ethylene-responsive transcription factor 2 164 223 - -
Seca4g02034 348 Gene3D AP2/ERF domain 164 224 IPR036955 GO:0003700|GO:0006355
Seca4g02034 348 PANTHER DNA-BINDING DOMAIN 115 269 IPR044808 GO:0003700|GO:0009873
Seca4g02034 348 MobiDBLite consensus disorder prediction 53 115 - -
Seca4g02034 348 PRINTS Ethylene responsive element binding protein signature 188 204 IPR001471 GO:0003700|GO:0006355
Seca4g02034 348 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Seca4g02034 348 MobiDBLite consensus disorder prediction 223 249 - -
Seca4g02034 348 SUPERFAMILY DNA-binding domain 165 223 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02034 Seca-Chr4 34680817 34682583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02034 163 250 AP2-EREBP Transcription Factor Family AT5G13330 69.318 1.79e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g02034 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02034 - - mtr:11421690 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02034 4 34680817 34682583 Seca4g02034 4 34680817 34682583 ECH
Seca12g06228 12 154159700 154161217 Seca4g02034 4 34680817 34682583 ECH