Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02029 ATGTCAGTGCCAATGGCGATTGCTCTCTCTGGCCAACTTCTTCTTGGACAGCCTGTAATGGTCAAACCTTCAGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTGGACAGAAAACTATATGTGGGAAACCTTCACTTCAATATGACTGAGAGTCAGTTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAACTGCCTCTTGACCTGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCAATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATTGCGGGCAGGGTTATCAAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGACACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGTCTTTAAATGCCCAATCAAGAGCCTTGCTTATGCAGAAGCTGGATCGCTCTGGCATTACTGCTAGCATTGGTGTACCTGGTGTGCCCATTATGAATGGGTCAGCTCCTGCTCAACAGGCTAGCTTGCCTATTGGTAATCCAGGAATAGTACCAACACCAGCTCTACCAATGCAAATTATGCCTACCCAAGTGGCTGAACCTGTTGGCACCCCAAGTGAATGTTTATTGTTGAAGAATATGTTCGATCCAGCCACAGAGACAGAGCCAGATTTTGATCTAGACATCAAAGACGATGTAGAAGAAGAGTGTTCTAAATTTGGGCGGGTGAAGCATATATATGTTGACAAGAGAAGTGCAGGTTTTGTGTATTTGCGGTTTGAAACAGTAGAAGCATCAAGTGCTGCTCAACGTGCAATGCACATGAGGTGGTTTGCACGCAGATTGATTTCAGCTATCTACATGGAACCTCAGATATATGAAGCCAAGTTTAAAGGGGAAATTTGA 954 0.4423 MSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFANLEHAKAAQSLNGKLEIAGRVIKVSSVTDHVGSQDTTAKSADFDDDEGGLSLNAQSRALLMQKLDRSGITASIGVPGVPIMNGSAPAQQASLPIGNPGIVPTPALPMQIMPTQVAEPVGTPSECLLLKNMFDPATETEPDFDLDIKDDVEEECSKFGRVKHIYVDKRSAGFVYLRFETVEASSAAQRAMHMRWFARRLISAIYMEPQIYEAKFKGEI. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02029 317 FunFam Splicing factor, CC1-like protein 218 317 - -
Seca4g02029 317 CDD RRM2_RBM23_RBM39 53 130 - -
Seca4g02029 317 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 313 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca4g02029 317 SUPERFAMILY RNA-binding domain, RBD 51 305 IPR035979 GO:0003676
Seca4g02029 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Seca4g02029 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Seca4g02029 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 299 IPR000504 GO:0003723
Seca4g02029 317 Gene3D - 218 316 IPR012677 -
Seca4g02029 317 SMART rrm1_1 224 301 IPR000504 GO:0003723
Seca4g02029 317 SMART rrm1_1 52 125 IPR000504 GO:0003723
Seca4g02029 317 NCBIfam splicing factor, CC1-like family 1 313 IPR006509 GO:0003723|GO:0005634|GO:0006397
Seca4g02029 317 FunFam Splicing factor CC1-like 35 140 - -
Seca4g02029 317 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 144 241 IPR029123 -
Seca4g02029 317 CDD RRM3_RBM39_like 222 304 - -
Seca4g02029 317 Gene3D - 46 143 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02029 Seca-Chr4 34598001 34607255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02029 23 124 Eukaryotic Initiation Factors Gene Family AT4G34110 36.893 1.64e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02029 K13091 - gmx:100802446 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06230 12 154190324 154196824 Seca4g02029 4 34598001 34607255 ECH
Seca4g02029 4 34598001 34607255 Seca4g02029 4 34598001 34607255 ECH
Seca12g06230 12 154190324 154196824 Seca4g02029 4 34598001 34607255 PCT