Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02018 ATGGATTTGGACGATTTCCGATCCATATTGGATACGGCTGGCGTCGACGTGTGGATGTTCATCGACACCGCAATCGCCGTCGCTTCCTCGGATTACGCCGGCGAGTTGAAGCGCCGCAGAGACGGAATCGTCGAGCGACTCTACGCTGCGACGACGGCTCCCCCGCGGTGCCGGAATTGCGATGACAAAGACCTTCTCAGGCCCAATGGCAACCAAATCAAGAAGCAGAGCAACCCTAGCCCCAGCCCCGAACGACAACGACAACGACAACGACAACAACGCCGCGGTGCCTCTTCTCCTGCAACGCCACAGTCTCTCGGAAACGACGACGACAACGACGAAGAGATAGATCCTTACGGTGGCTTATTCGATGATGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAACTCGAAGAACCTGACCAGTCTGAAGATTCTTTGGTGGAGTTGCTGCAAAATCTCGCCGACATGGATATTACATTCCAAGCGCTAAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTGCGGAAGCATCCCTCCAATGATGTTCGGCGATTGGTTAAGCTACTTGTCAGGTTTCGGAAGTGA 591 0.533 MDLDDFRSILDTAGVDVWMFIDTAIAVASSDYAGELKRRRDGIVERLYAATTAPPRCRNCDDKDLLRPNGNQIKKQSNPSPSPERQRQRQRQQRRGASSPATPQSLGNDDDNDEEIDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRFRK. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02018 196 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 125 194 IPR035441 -
Seca4g02018 196 ProSiteProfiles TFIIS N-terminal domain profile. 125 196 IPR017923 -
Seca4g02018 196 CDD TFIIS_I 127 193 - -
Seca4g02018 196 MobiDBLite consensus disorder prediction 59 121 - -
Seca4g02018 196 MobiDBLite consensus disorder prediction 93 107 - -
Seca4g02018 196 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 127 193 IPR035441 -
Seca4g02018 196 Pfam TFIIS helical bundle-like domain 149 192 IPR017923 -
Seca4g02018 196 MobiDBLite consensus disorder prediction 70 86 - -
Seca4g02018 196 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 193 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02018 Seca-Chr4 34440135 34441110 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca4g02018 Med26 6.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02018 - - gmx:100804034 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02018 4 34440135 34441110 Seca4g02018 4 34440135 34441110 ECH