Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02015 ATGAGGCTCCTTCTCCGAAAACACCTCTTGTTTTTCCCTTCTTCTTGTTGTTCCTGTTCATCACCGCCAGCTCGCACACTTCTTCTTCGGCTGCAAGTGTGTGAGTTTTCATCATCATCATCATCTTCTTCTTCTCACTGGAGGCGTCACGACGACGAGTCCCGCAACGTTAGGGTTTCGGTATGGTGGGATTTCGAGAATTGCAACGTGCCCGCCGGCTTTAACATTTTGAAGGTTGCACCTGCCATCGCGGTCGCTGTGAGGGCCAACGGGATTAAAGGTCCTATTAAGATTACCGCTTTCGGCGATGTTTTGCAGTTCTCCAGAGCTAACCAGGAAGCACTTGCTTTCACCGGGATTCATCTTGCTCACATTCCCAACGGTGGAAAGAATAGTGCTGATAGATCTCTTCTTGTGGATCTTATGCATTGGGTTTCCCAAAATCCTCCACCTGCACATCTCTTTCTGATATCCGGTGATAGAGACTTTGCTGGCATGTTGCACCGGTTAAGAATGAATAACTACAACATCTTGCTTGCAATTCCAGGAAGGGCTCCTGATGTTCTCTGCAGTGCAGCAACTATAATGTGGCAGTGGCCATCATTGCTTAAGGGAGAAGATCTCACTGGAAAACATTTCAACCATCCTCCTGATGGTCCGTTTGGTTCTTGGTATGGAAACTATAAGGTGCCTCTTGAAGACCCCTACTCAGCTGGTGCTGAGCATTCTACATCTTTCCAAAATGTGGAGATCTGTGAACCTTCCTTAGAAGCTGCAGTTCCAAAGTCTGTTGTAAGACATGTTAAGCGTGTACTGAGTAAAAACAGAAATGGGATCTCCATTTTAGATCTTCGCAAAGAGTTGATGAATTGTGATGTGCGTTTGGATAAAAACTTATATGGATATAAAAAGTTTTCCCGATTTCTATTATCAATTCCACATGTACAGCTTCAGCCTCTGGGTGATGGTCATTTTTGTGTACATCTGGTCCCCTCAGAATCCCCTGAACCCTTTGAGAGAAATGTTGTTCCATCAACAATATCTGCTGTTAAGAATGAGGAGAGGGGCAATGCAGCAACTCCAAAGCTAAATGGTGAGGGTAAAAATATGGATAGAGATGCAAATGGGACAACCTCAATGGCCTCATTGTATGAAAGGAGCATGGATGGTGATTCAAAATCATTCCAGCCGGTCCCTTCACAAGGCAAACCTATCGAGGAATATGTGGATGGTAAATCATCATTTCCTTCATTGGTTGAAAAACATGTGTGTCAGCCTCCAAATGAGTTGCAGAAATCTTCTCTGGGCAGTGAGAAGGTTGCAGATGTGGCTAATGCACAATTGTCGGAGAAGGACAATGAAGTTTCCAAAACAAAGACGGGTTCCTTAAAGGTGAGATCTAATACAACTTTAGGGAAGCACTCTGCTGGGAATGATTACACAACGGATGAAAACAATGATATTACAAATTATGAATCTGGAAAATTTAAATCAAAGGACAAATATGAGAATCCAGTTGAGAAAAGACCTGATGGAAGTGCTGAAACTTATAAAAGAAGTTCAACTTTCTTTAGCTGGATTAAAAGTTGGTTTCCGTTCTCGAAAAGAAGTGCAAAGTCTGATGATTCAACTGCTCATCAGAACAAGGTAGTTAGTAATTTTGAGGATCCCAAGTTATCTGAACTGGGCCAGACTGTTAGTCATTTTGGAGAGACCGAGTCATCAGAACTGGACCAGGACGTTAGTCATTCGAGAAAGCCTGAGTTATTTTCTAGTGGTTCATTTTGGAATGACGTGGAGTCTTTTGTTTTCTCACCCAAAGGGTCGCTTCTTTTCTCCCAGTCAAGAAGAAGGGAGGATCTGGCACATAAATTACAAAAGCATGGACCCATGGTTCTAAGATCTCTCACTGAAAATGAAATCTTTCAATTGTTGGAGTTGTTAATAGAAGAGAAAAAATGGTTGGAGGAAAGCCCCTCCCAAGCATATCCTTATAGGCTAACACAACCAGTTCAGAAGAACTCATCATTGGGCCAAGCTCATGGTGCAAATGGCTTGAGGTCTCTCTTTCTAACTAGAACACCACAGCCCAACTTGCAAAATTCATTTGAGCATGATGTGGAGAAACACAATCAGAGTATTCATCAGACTAGAGTTTGCACACCTGCCACTGAAACAAAATACACTGAGAGGTCTAGAAATGATATCTTAGCAGACTGTCAGAAACTTGTGAATGAGATATTGAAGGAACACCCAGAAGGGTATAATATTGGTTGTTTTCGAAAACAATTTGTTGATAGGTATGGCTATCATCTTGATATACAGAAGCTTGGTTATCAGAAGTTGGCATCCTTATTACAGATAATGCCTGGGGTTAAATTAGAGTCCACTTATATGTTACCTTCCGTTCCTGCTGTTTGTGCTTCTGACTCCGAAACTTGTACCCTCAAAACTCAAGTAACCAATGCTAGTCATGCAGACTCCAACTCAGATAATGAGTTATCTGATTCAGCCCCGAAATATGATAACATGGAATCTCCTTGGGAGGAATTAGGTCCTGTGTTTGTCAACAATGCCAACCAGAATGATGTGGAATCAAAATTGAGTCAGAAAGCCAGAGAACTGGATAAGCATCCTGACTATGAACCCATAGGTGAAAATTATGATTCTTCTGAATCTGAAGACGATAGCCCTTGTTCAACTCAACTAGAAGAGCAAGGAAAGGCAAAATGTAATGAGCAAGACAGTTCTTTTTGGCAAGCTCTGGATCTGTGGCACAGCAGCAAGGAAGGAGAGAATAGTGTGAAGAAGTCAGACAATATTGAGGGCTTGGGCAGTTCTCTGATTGATTTGATAAATTCATCCACTGAGTCGTCACGGGGTACCATTTCTAAAATTCCTTCAGGGATTTCCAGAGAGAAGCAGAGATCTCGAAAGTATTCGTTTGTCGCTGATCCCGTCTTACCCGATAAGGACAAGCTCATTGATGGGATATTAGATGGCTTCAAAAAGGCAGATGAGCAAAAAATGCAAAACTGA 3039 0.4222 MRLLLRKHLLFFPSSCCSCSSPPARTLLLRLQVCEFSSSSSSSSSHWRRHDDESRNVRVSVWWDFENCNVPAGFNILKVAPAIAVAVRANGIKGPIKITAFGDVLQFSRANQEALAFTGIHLAHIPNGGKNSADRSLLVDLMHWVSQNPPPAHLFLISGDRDFAGMLHRLRMNNYNILLAIPGRAPDVLCSAATIMWQWPSLLKGEDLTGKHFNHPPDGPFGSWYGNYKVPLEDPYSAGAEHSTSFQNVEICEPSLEAAVPKSVVRHVKRVLSKNRNGISILDLRKELMNCDVRLDKNLYGYKKFSRFLLSIPHVQLQPLGDGHFCVHLVPSESPEPFERNVVPSTISAVKNEERGNAATPKLNGEGKNMDRDANGTTSMASLYERSMDGDSKSFQPVPSQGKPIEEYVDGKSSFPSLVEKHVCQPPNELQKSSLGSEKVADVANAQLSEKDNEVSKTKTGSLKVRSNTTLGKHSAGNDYTTDENNDITNYESGKFKSKDKYENPVEKRPDGSAETYKRSSTFFSWIKSWFPFSKRSAKSDDSTAHQNKVVSNFEDPKLSELGQTVSHFGETESSELDQDVSHSRKPELFSSGSFWNDVESFVFSPKGSLLFSQSRRREDLAHKLQKHGPMVLRSLTENEIFQLLELLIEEKKWLEESPSQAYPYRLTQPVQKNSSLGQAHGANGLRSLFLTRTPQPNLQNSFEHDVEKHNQSIHQTRVCTPATETKYTERSRNDILADCQKLVNEILKEHPEGYNIGCFRKQFVDRYGYHLDIQKLGYQKLASLLQIMPGVKLESTYMLPSVPAVCASDSETCTLKTQVTNASHADSNSDNELSDSAPKYDNMESPWEELGPVFVNNANQNDVESKLSQKARELDKHPDYEPIGENYDSSESEDDSPCSTQLEEQGKAKCNEQDSSFWQALDLWHSSKEGENSVKKSDNIEGLGSSLIDLINSSTESSRGTISKIPSGISREKQRSRKYSFVADPVLPDKDKLIDGILDGFKKADEQKMQN. 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02015 1012 Gene3D - 257 335 IPR041966 -
Seca4g02015 1012 MobiDBLite consensus disorder prediction 355 374 - -
Seca4g02015 1012 Gene3D - 731 799 IPR041966 -
Seca4g02015 1012 CDD LOTUS 737 792 - -
Seca4g02015 1012 MobiDBLite consensus disorder prediction 821 839 - -
Seca4g02015 1012 Gene3D - 50 199 - -
Seca4g02015 1012 MobiDBLite consensus disorder prediction 821 846 - -
Seca4g02015 1012 MobiDBLite consensus disorder prediction 867 885 - -
Seca4g02015 1012 CDD PIN_limkain_b1_N_like 58 182 - -
Seca4g02015 1012 MobiDBLite consensus disorder prediction 867 912 - -
Seca4g02015 1012 PANTHER LIMKAIN B LKAP 36 746 IPR024768 GO:0005777|GO:0010468
Seca4g02015 1012 MobiDBLite consensus disorder prediction 460 492 - -
Seca4g02015 1012 ProSiteProfiles OST-type HTH domain profile. 736 810 IPR025605 -
Seca4g02015 1012 Pfam NYN domain 58 193 IPR021139 GO:0004540
Seca4g02015 1012 ProSiteProfiles OST-type HTH domain profile. 260 331 IPR025605 -
Seca4g02015 1012 Pfam OST-HTH/LOTUS domain 262 323 IPR025605 -
Seca4g02015 1012 Pfam OST-HTH/LOTUS domain 738 795 IPR025605 -
Seca4g02015 1012 MobiDBLite consensus disorder prediction 446 514 - -
Seca4g02015 1012 MobiDBLite consensus disorder prediction 493 514 - -
Seca4g02015 1012 MobiDBLite consensus disorder prediction 894 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02015 Seca-Chr4 34415455 34420497 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02015 57 205 C2H2 Transcription Factor Family AT5G61190 45.638 4.62e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02015 - - tpra:123916554 1194.87