Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02013 ATGCATTGGGTTTCCCAAAATCCTCCACCTTCACATATCTTTCTGATATCCGGTGATAGAGACTTTGCTGGCATGTTGCACAGGTTAAAAATGAATAACTACAACATCTTGCTTGCAATTCCAGGAAGGGCTCATGATGTTCTCTGTAGTGCAGCAACTATAATGTGGCAGTGGTTATCATTGCTCAAAGGAGAAAATCTCACATCCTCCTGA 213 0.4178 MHWVSQNPPPSHIFLISGDRDFAGMLHRLKMNNYNILLAIPGRAHDVLCSAATIMWQWLSLLKGENLTSS. 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02013 70 PANTHER LIMKAIN B LKAP 1 62 IPR024768 GO:0005777|GO:0010468
Seca4g02013 70 Pfam NYN domain 1 53 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02013 Seca-Chr4 34404439 34404651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02013 3 64 C2H2 Transcription Factor Family AT5G61190 51.613 4.63e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02013 - - tpra:123916554 130.568
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02013 4 34404439 34404651 Seca4g02013 4 34404439 34404651 ECH