Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02009 ATGCTGGAAATCTCAACTTTACCGGAAAATCCCATCGAAAACCCTCAGGTAGGGGAGGGCGGTGCTCCTAGTAGCGAGCCAGTTTCTGATGGGTTCAAAGCAGAGCATGGCGAAGAAGGTGACCGGAATTCCGCCGCGAACCGGTGGCCTCGTGAAGAGACAATGGCTTTGCTCAAGATAAGGTCTGAAATGGACGTTGCTTTTAGAGATACCAGCCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTAGCGGAGCTAGGATATCATAGGAATGCAAAGAAGTGCAGGGAGAAGTTTGAGAACATTTACAAGTACCATAGAAGGACCAAGGAAGGTCGTTGTGGTAAATCCAACGGAGGCAAAACTTATCGATTTTTTGAGCAATTAGAAGCTTTATATACCCACCCATCCTCAGAGGGAAAACAACAACAACATGAGGTGTCGGCGAAATCAACAACCAATGTTATTCCTCCGGAAAACAACAACAACAACGTGAATGTCATTCACGATGCAGTTCCTTGTTCCATTAGATTCCCCAGTGCAAACGTGGTGGAACAGGAACAGGAACAGGAACATGAACATTCGAGTTCCACCACTTCCTCTTCCCAGGAATTAGGTGCGCGGAGAAAGAACAACAAAAGGAAACTGACCAAGTTTTTTGAAGGATTGATGAGGGAAGTGATAGAGAGGCAAGAAACTCTACAGAGGAAGTTAATGGAAGTGTTGGACAAGTGTGAAAGAGATCGAATATCGAGGGAGGAAGCATGGAAGGTGGAAGAGTTGGCTCGGATTAAGAAAGAGCGTGAGCTTCTTGCTCAGGAAAGGTCACTCTCTTCTGCAAAAGATGAAGCTGTACTTGCCTTTTTGAAAAAGATAGCAGAAAACTCTGCAGGAACAACGGTGCAGTTACCAGACAAAATATTTCAGTTTCCAAAAGAAGTGCAAGAAAATGCTAATGGGAATATTGGAGGAGAGAAGCAAGAGTGTGGGAATAATAATGTTAACATTGGGAATTTCATTCACATGAGTTCATCAAGATGGCCAAGGGATGAAGTTGAAGCTTTGATAAGGTTAAGGACACAGATGGATGTGCAAGTGCAATCACAAGGGAATGGATCTAAAGGACCTCTTTGGGAGGAAATTTCTACTGCAATGAAAGGACTTGGATATGATCGTAGTGCTAAGAGGTGCAAAGAGAAATGGGAGAATATAAACAAGTACTTCAAGAGGATGAAGGAGAAAAACAAGGTGAAACCTATGGATTCTAAAACTTGTCCTTATTATCACCACCTGGAAGCTTTATACAGTAAAAAGCCTAAGAAGGTGGATGAGTCAGGTGATTCTGGGAATGAATTGAGGCCTGAGGAGCTATTGATGCATATTATGGGGAGTAGTACTACTACTAGTCAAGAAGAGAGACAACAACAGTTAGAATCATCTTCTGAAGATGCTGATAGAGAAAACATGGATCAGAATCAGGGAGATAATGAAGATCAAGATGCAGGGTATCAAATGGTTGCCAATAGTTCTTCCATAGCAATCATGAGTTAA 1557 0.429 MLEISTLPENPIENPQVGEGGAPSSEPVSDGFKAEHGEEGDRNSAANRWPREETMALLKIRSEMDVAFRDTSPKAPLWEQVSRKLAELGYHRNAKKCREKFENIYKYHRRTKEGRCGKSNGGKTYRFFEQLEALYTHPSSEGKQQQHEVSAKSTTNVIPPENNNNNVNVIHDAVPCSIRFPSANVVEQEQEQEHEHSSSTTSSSQELGARRKNNKRKLTKFFEGLMREVIERQETLQRKLMEVLDKCERDRISREEAWKVEELARIKKERELLAQERSLSSAKDEAVLAFLKKIAENSAGTTVQLPDKIFQFPKEVQENANGNIGGEKQECGNNNVNIGNFIHMSSSRWPRDEVEALIRLRTQMDVQVQSQGNGSKGPLWEEISTAMKGLGYDRSAKRCKEKWENINKYFKRMKEKNKVKPMDSKTCPYYHHLEALYSKKPKKVDESGDSGNELRPEELLMHIMGSSTTTSQEERQQQLESSSEDADRENMDQNQGDNEDQDAGYQMVANSSSIAIMS. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02009 518 Gene3D - 349 412 - -
Seca4g02009 518 Gene3D - 49 110 - -
Seca4g02009 518 MobiDBLite consensus disorder prediction 463 477 - -
Seca4g02009 518 MobiDBLite consensus disorder prediction 186 212 - -
Seca4g02009 518 Coils Coil 226 246 - -
Seca4g02009 518 PANTHER FI21293P1 23 498 - -
Seca4g02009 518 FunFam Trihelix transcription factor GT-2 49 110 - -
Seca4g02009 518 MobiDBLite consensus disorder prediction 463 518 - -
Seca4g02009 518 CDD GT1 347 414 - -
Seca4g02009 518 SMART sant 345 409 IPR001005 -
Seca4g02009 518 SMART sant 45 107 IPR001005 -
Seca4g02009 518 MobiDBLite consensus disorder prediction 31 50 - -
Seca4g02009 518 ProSiteProfiles Myb-like domain profile. 347 407 IPR001005 -
Seca4g02009 518 MobiDBLite consensus disorder prediction 478 495 - -
Seca4g02009 518 Pfam Myb/SANT-like DNA-binding domain 47 134 IPR044822 -
Seca4g02009 518 Pfam Myb/SANT-like DNA-binding domain 347 436 IPR044822 -
Seca4g02009 518 ProSiteProfiles Myb-like domain profile. 41 105 IPR001005 -
Seca4g02009 518 MobiDBLite consensus disorder prediction 1 50 - -
Seca4g02009 518 CDD GT1 47 112 - -
Seca4g02009 518 FunFam Trihelix transcription factor GT-2 349 412 - -
Seca4g02009 518 MobiDBLite consensus disorder prediction 497 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02009 Seca-Chr4 34304258 34306755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02009 41 442 Trihelix Transcription Factor Family AT1G76880 44.124 2.11e-113 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca4g02009 Myb_DNA-bind_4 5.1e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02009 - - gmx:100805632 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02009 4 34304258 34306755 Seca4g02009 4 34304258 34306755 ECH