Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02002 ATGTATGCTGCTGCTGCTAATTCCTTCACTTCACCCCTCTTCCATGATATTCTTGAGAATTTCCATTCAAGAAGGTTACTCCTTCACTCCTTACTTAACCAATCAACAAACTCAGCAAATCCCCCTGCTTCTACAAGCAGTCATGATTCAACAGAATCATATCTTGGAGATGGAAATTTTGATGCAAATGTTGTTATGGTACTCTCAGTCCTATTATGTGCTCTTTTTTGTTCACTTGGTTTGAACTCCATCATAAGATGTGCATTAAGGTGTTCCAATTTAGTTGTCATGAGTGACTCAACAAACAATCCTCCAGCAAGAGTGGTCAACACAGGGATCAAGAAGAAAGCTCTCAAGACTTTTCCAACAGTGAGTTACTCAGCTGAATTGAACCTTCCAAGTTTGGATTCAGAGTGTGTGATATGCTTGTCAGAGTTCACAAATGGTGATAAGGTGAGAATTTTGCCAAAGTGTAACCATGGTTTCCATGTACGTTGCATTGATAAATGGCTAAGTTCACACTCATCTTGCCCTAAATGTAGACAGTGCCTTATTGGGACTTGTCAAAAGATTGTTGGGTGCAGGCAAGCTAGCTCATCACAATTACCAGTAGTACCTATGTTGCCAGTGCCAGAAACAATTATAACCATAGCTCCACTTGAGCCAGAAGGTTTGGTGCGTAATTATAGGGAAGTTAGCTAA 702 0.4031 MYAAAANSFTSPLFHDILENFHSRRLLLHSLLNQSTNSANPPASTSSHDSTESYLGDGNFDANVVMVLSVLLCALFCSLGLNSIIRCALRCSNLVVMSDSTNNPPARVVNTGIKKKALKTFPTVSYSAELNLPSLDSECVICLSEFTNGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIGTCQKIVGCRQASSSQLPVVPMLPVPETIITIAPLEPEGLVRNYREVS. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02002 233 CDD RING-H2_EL5-like 138 181 - -
Seca4g02002 233 PANTHER RING-H2 FINGER PROTEIN ATL78 17 225 IPR044602 GO:0016567|GO:0016740
Seca4g02002 233 Pfam Ring finger domain 138 181 IPR001841 -
Seca4g02002 233 SUPERFAMILY RING/U-box 117 185 - -
Seca4g02002 233 FunFam RING-H2 finger protein ATL73 99 186 - -
Seca4g02002 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 185 IPR013083 -
Seca4g02002 233 SMART ring_2 139 180 IPR001841 -
Seca4g02002 233 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02002 Seca-Chr4 34087447 34088148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02002 25 185 C3H Transcription Factor Family AT3G10910 45.238 1.14e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02002 K19040 - gmx:100787934 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02002 4 34087447 34088148 Seca4g02002 4 34087447 34088148 ECH
Seca10g01118 10 10758683 10759360 Seca4g02002 4 34087447 34088148 ECH
Seca12g06256 12 154389878 154390594 Seca4g02002 4 34087447 34088148 PCT