Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01998 ATGGAAAGTGAAGGCAAAGACAAATCGACGAAGATAGTAAGAGTGGGAGTGGGAAAAGACTATTACGTTTTGAAATCCAAAATCGGAGAGGGTTCATATTCCTCAGTGTGGAAAGCTGAGCAGAGACCAAGTGGTCAAGAGGTTGCGGTCAAACAGGTCTTCCTCTCCAAACTCACCCCTCGCCTCAAGGCTTGCTTGGACTGCGAGATCAATTTCTTGTCTTCTGTTAATCATCCTAATATTATTCGTCTTCTTCACTTCTTCCAGGCTGATGGATGTGTATACCTGGTCCTGGAGTTTTGTGCTGGAGGGAATCTAGCTTCTTATATTCAACGCCATGGGAGAGTTCAACAACAAACGGCCAGAAAATTCATGCAGCAGCTTGGCTCTGGTCTAAAGGTATTACACTCTCGAGGCATCATTCACAGAGACTTGAAACCAGAGAACATTTTGCTATCTAGCCGTGGGGCTGATGCCGTGCTAAAGATAGCTGATTTTGGTCTCTCAAGAATTGCCTGCCCGGGTGAGTATGCTGAGACTGTTTGTGGTTCTCCATTATACATGGCTCCAGAAGTTCTTCAGTTCCAGAGATATGATGCCAAGGTTGACATGTGGAGTGTTGGGGCCATTCTTTTTGAGCTTCTAAATGGCTACCCACCTTTTAATGGTAGAAATAATGTTCAGCTGTTGAGAAACATCAGATCCTGTACCTGTCTTCCATTTTCTCAACTGATTATTTCAGGACTGGATCCTGACTGTCTTGATATTTGTTCAAGACTACTATGCTCAAATCCAGTGGAGCGCCTATCTTTTGATGAATTTTATTGGCATAGCTTTCTACAAAGAAAATTGATGGCAAGTTGA 864 0.434 MESEGKDKSTKIVRVGVGKDYYVLKSKIGEGSYSSVWKAEQRPSGQEVAVKQVFLSKLTPRLKACLDCEINFLSSVNHPNIIRLLHFFQADGCVYLVLEFCAGGNLASYIQRHGRVQQQTARKFMQQLGSGLKVLHSRGIIHRDLKPENILLSSRGADAVLKIADFGLSRIACPGEYAETVCGSPLYMAPEVLQFQRYDAKVDMWSVGAILFELLNGYPPFNGRNNVQLLRNIRSCTCLPFSQLIISGLDPDCLDICSRLLCSNPVERLSFDEFYWHSFLQRKLMAS. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01998 287 Gene3D Transferase(Phosphotransferase) domain 1 17 287 - -
Seca4g01998 287 FunFam - 145 286 - -
Seca4g01998 287 FunFam Aurora kinase A 16 104 - -
Seca4g01998 287 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 10 282 IPR045269 GO:0004674|GO:0006914
Seca4g01998 287 CDD STKc_ATG1_ULK_like 28 279 - -
Seca4g01998 287 SUPERFAMILY Protein kinase-like (PK-like) 17 283 IPR011009 -
Seca4g01998 287 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Seca4g01998 287 ProSiteProfiles Protein kinase domain profile. 22 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01998 287 SMART serkin_6 22 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01998 287 Pfam Protein kinase domain 22 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01998 287 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01998 Seca-Chr4 34007355 34010687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01998 22 273 CBL-interacting serine-threonine protein kinases AT2G30360 37.838 9.80e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Seca4g01998 Pkinase 9.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01998 - - lja:Lj1g3v1289070.2 499.204