Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01995 ATGATTACTGAGTTGTTCACCTCGGGGAGCCTCAGACAGTATCGTAGGAAACACAGGAAAGTTGACATGAAGGCTGTTAAAGGATGGGCAAGACAGATTTTAGTGGGGTTAAACTACCTCCACAGTCACAACCCACCTATTATCCATAGGGACCTGAAGTGTGATAATATATTTATAAATGGTCACCAAGGAGAAGTTAAAATTGGAGATCTGGGGTTGGCAACACTCTTGAAGCAGACTAATGCCAAAAGTGTAATTGGTACCCCAGAGTTTATGGCACCTGAACTGTATGATGAAAACTATAATGAATTAGCCGACATATATTCTTTTGGGATGTGCATGCTTGAGTTGGTGACTTCTGAGTATCCTTACCGTGAATGTAGAAACTCTGCTCAGATATACAAGAAAGTTTCATCTGGTATAAAGCCAGTTGCTCTTTCTAAAGTCAAAGATCCAGAAATAAAATCATTTATTGAGAAATGTCTTGTCCCAGCATCTCAAAGATTGTCAGCAAAGGAACTTCTGATGGACCCTTTTCTCCAAGTGAATGGTTTAGGAAAGAATCGTCCTCTTCCATTACCAGATATTGTCCTTCCAAAATTCGGAGCCTTTGAAAATCGTTGTCTGATGTCAGAAGGTCCAGCTAGTGCACGTACCGGATCCATTTCAATGGATCTCGGTGATACCAGTGAGCTACCATTGATCACTGTATTTTATAGTTCTGTTGATGATGCATCATCTTCTCCATGTGTTGAGATACGAAGGTTGAAGGCAGGTGACATATTTTTTCTAAAAGGTGAAGAAAATGATGAGAACTCTGTATCGTTAGTTCTCCGGATAGCTGATCAGAGCGGGCGGGCAAGAAATATCCATTTCATGTTCTACCTCGACAGTGATACTGCCATCTCAATTTCAAGTGAAATGGTTGAACAACTTGAACTTGCCGAGCAGAATATTAAATTCATTGCTGAGTTAATTGATCTGTTAATGATAACTTTGGTTTCTGATTGGAAACCTTGTGTAGCAATTGATCATTTAGTTTCTCCAAATAGTAAACGGATTCATCTGAGCCAACGAAAAAAAGACTCAGAGATGGCAAAATATAAACAAAGTTCAGAAGATTCTAGCCAAATTGTGGCTGATGATGTAGGTCCCTCAATCTCACCTGGAAGATCAGCAGAAAAAGAAAACCATGATGATGTGACTTTTGATGAGGTTTTATCTCATGCAAGCATTGGTCTTCAAAGAGCAACAAAGACAGATGATTTGTGTTCTGTAATGTCATATGCTTCTGCAGCATCTGACTTCAATGATAGGAATTTATCTGCAGTTTCATTCATGTCTGCTAAATCAGGTTTTACAGACATCAACTTACCTACAGTGAATTGTGGGAGTCAAACCTCGCTTGCATCTGAAATTGTGACATCACCTGATAATAAGAGCAAGCTTCAATATCATCCCATTAGTGCTTCCTCCTCCGCTCCTGAAGATGAGTTGAGAGTAGAGTTAGAGATGATTGAACAGCAATATCAAGAGGCAATTAAAGATTTATCCAAAAGAAGATACCAGGCCATCATAGAGACCAGAAGGAGGCTGTCAAAAAAAAATGCAATCATAGAATAA 1623 0.3925 MITELFTSGSLRQYRRKHRKVDMKAVKGWARQILVGLNYLHSHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLKQTNAKSVIGTPEFMAPELYDENYNELADIYSFGMCMLELVTSEYPYRECRNSAQIYKKVSSGIKPVALSKVKDPEIKSFIEKCLVPASQRLSAKELLMDPFLQVNGLGKNRPLPLPDIVLPKFGAFENRCLMSEGPASARTGSISMDLGDTSELPLITVFYSSVDDASSSPCVEIRRLKAGDIFFLKGEENDENSVSLVLRIADQSGRARNIHFMFYLDSDTAISISSEMVEQLELAEQNIKFIAELIDLLMITLVSDWKPCVAIDHLVSPNSKRIHLSQRKKDSEMAKYKQSSEDSSQIVADDVGPSISPGRSAEKENHDDVTFDEVLSHASIGLQRATKTDDLCSVMSYASAASDFNDRNLSAVSFMSAKSGFTDINLPTVNCGSQTSLASEIVTSPDNKSKLQYHPISASSSAPEDELRVELEMIEQQYQEAIKDLSKRRYQAIIETRRRLSKKNAIIE. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01995 540 FunFam probable serine/threonine-protein kinase WNK9 6 185 - -
Seca4g01995 540 Coils Coil 496 520 - -
Seca4g01995 540 Gene3D Transferase(Phosphotransferase) domain 1 6 184 - -
Seca4g01995 540 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 532 - -
Seca4g01995 540 SMART serkin_6 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01995 540 MobiDBLite consensus disorder prediction 357 399 - -
Seca4g01995 540 SUPERFAMILY Protein kinase-like (PK-like) 1 181 IPR011009 -
Seca4g01995 540 Gene3D - 272 375 - -
Seca4g01995 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Seca4g01995 540 Pfam Protein kinase domain 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01995 540 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01995 Seca-Chr4 33991274 33994716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01995 23 385 MAP Kinase Kinase Kinase AT1G49160 65.014 1.81e-176 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca4g01995 Pkinase 2.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01995 K08867 - gmx:121175054 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01995 4 33991274 33994716 Seca4g01995 4 33991274 33994716 ECH
Seca12g06259 12 154425237 154428742 Seca4g01995 4 33991274 33994716 PCT