Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01992 ATGGTGAAAGACGATCTATGCATAACCGTTCCCACCTACTTCCGTTGCCCAATCTCACTCGATATCATGAAATCCCCTGTTAGCCTCTGCACCGGAGTCACCTACGACCGTTCCAGTATCCAACGCTGGCTAGACGACGGCCACAACACTTGTCCTGCAACCATGCAGGTCCTTCAAACCAAAGATTTCGTTCCTAACCGCACTTTACAAAGCCTCATCCAGATCTGGACTGACTCGGTTCGTCAACGGATTGAACTTCCCGGTTCTAATTCGGTTCCTCCCCGTGACCATGTCCTCCAAGCCATCGCGGACTTGGACTCCAACGGTTCTGACCGGTTCTGTTCATTAAAGAAAGTGGTTCATTTCGCCCAAGATTCTGAACCGAACAGAGTCTTTCTCGCGAAAATTGACCACTTCGTGCCTCTGCTTGTTCGTTTGCTCGACAATGTCGACGACGGCGTTGAGTTTCTCGAACAGGTTGTGAAGGCGTTGGGTTTGGTTCTGGATAAAATTGAAGATCGCGAGGGTTTGAAAAACCGTATGTTGAAGGGAGAGAAGCAGCGGTGCTTGGATTCTCTGCTTCTCGTTCTGCAACGAGGAAGCTCTGATTCGAGAATCGCCTCTGCTAGGGTTCTTAAATTCATCGCTGTGGACGTAGAGGCACAGCTTCTGATTGCCGAGAAGGAAGACTTGGTAACCGAATTGCTGAATTTAGCGACGCCGGAGAAAGATTCGGCGCTGATAGAGAGTTGCCTAGCGAGCTTGGTGGCAATCTCTGGACCCAAACGGAACAAATTGAAGCTGGTAAATCTGGGAGTAATCAAAATGTTATCGAAATTGTTGCTATCGGAATCGAACATGAGTGCGGCGGTGGTGGAGAAGGTGTTGAGGCTTGTGGAAACGGCGGCCTCTACAATGGAAGGGAGGAAAGAGATATGCGAGGACGCGGCGTGTGTGGCGGCGATACTAAACAAGGTTCTGAAGGTGTCGAGCATGGCCACGGAGCACGGGGTGACCACGCTGTGGAGTTTGTGTTTTCTGTTTCGGGATTGCAAAGCACAGGAAGCGGTTACGCAGGCTAATGGGTTGACAAAGATTTTGTTGCTAATGCAGAGCAATTGTTCTCCTCATGTGCGTCAAATGTGCACTGACTTGCTCAAAATTTTTAGGGTTAACTCAAAATCATGTCTCTCTTCCTATGACACCAAGACTACACATATCATGCCTTTTTGA 1233 0.4907 MVKDDLCITVPTYFRCPISLDIMKSPVSLCTGVTYDRSSIQRWLDDGHNTCPATMQVLQTKDFVPNRTLQSLIQIWTDSVRQRIELPGSNSVPPRDHVLQAIADLDSNGSDRFCSLKKVVHFAQDSEPNRVFLAKIDHFVPLLVRLLDNVDDGVEFLEQVVKALGLVLDKIEDREGLKNRMLKGEKQRCLDSLLLVLQRGSSDSRIASARVLKFIAVDVEAQLLIAEKEDLVTELLNLATPEKDSALIESCLASLVAISGPKRNKLKLVNLGVIKMLSKLLLSESNMSAAVVEKVLRLVETAASTMEGRKEICEDAACVAAILNKVLKVSSMATEHGVTTLWSLCFLFRDCKAQEAVTQANGLTKILLLMQSNCSPHVRQMCTDLLKIFRVNSKSCLSSYDTKTTHIMPF. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01992 410 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Seca4g01992 410 PANTHER WDSAM1 PROTEIN 9 398 IPR045185 GO:0061630
Seca4g01992 410 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Seca4g01992 410 SUPERFAMILY ARM repeat 67 390 IPR016024 -
Seca4g01992 410 Gene3D - 82 400 IPR011989 -
Seca4g01992 410 SUPERFAMILY RING/U-box 6 79 - -
Seca4g01992 410 CDD RING-Ubox_PUB 11 63 IPR045210 -
Seca4g01992 410 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Seca4g01992 410 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Seca4g01992 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 81 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01992 Seca-Chr4 33901557 33902789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01992 1 410 U-box Gene Family AT5G64660 53.444 6.65e-145 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01992 - - gmx:100799627 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01992 4 33901557 33902789 Seca4g01992 4 33901557 33902789 ECH
Seca4g01992 4 33901557 33902789 Seca12g06263 12 154497489 154498748 ECH
Seca12g06263 12 154497489 154498748 Seca4g01992 4 33901557 33902789 PCT