Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01987 ATGGGTTCCCTTGCATCTGCTTTAACAGCATTGCATATGGAATTCACTGATGAACTCACCTACTTGCCTGGAATGGCTCCTAGATCTGCTAATGAAGCCACATTAGAAAACGGTGGCATGCAGGTTCTTTCCAAGGAAGATACAGAGACCTTAGAACACTGCAAAGCTATGTCTAAAAGAGGCGAATGCCCTCCCTTTAAGGTTATTTTTGATTCATGTGAAGGCTATACTGTGGTGGCTGATGGCCCAATCAAGGATATGACATTTATTGCTGAATACACTGGTGATGTGGATTATATTAAGAAGCGAGAATCTGATGATGGTGACAGTATGATGACGCTTCTTCTTTCAAGAGATCCTTCTACAAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCCCGCTTCATCAATGGCATCAACAATCATACCCCGGAAGGTAGGAAGAAGCAGAACTGTAAGTGTGTGAGATACAATGTTGATGGAGAATGCCGGGTCTTGTTGGTGGCTACTCGTGACATTGCCAAAGGGGAGAAGCTCTATTATGATTATAATGGTTATGAGCATGAATACCCGACTCAACATTTTGTCTGA 597 0.4255 MGSLASALTALHMEFTDELTYLPGMAPRSANEATLENGGMQVLSKEDTETLEHCKAMSKRGECPPFKVIFDSCEGYTVVADGPIKDMTFIAEYTGDVDYIKKRESDDGDSMMTLLLSRDPSTSLVICADKRGNIARFINGINNHTPEGRKKQNCKCVRYNVDGECRVLLVATRDIAKGEKLYYDYNGYEHEYPTQHFV. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01987 198 CDD SET_ATXR5_6-like 61 198 - -
Seca4g01987 198 Gene3D SET domain 1 198 IPR046341 -
Seca4g01987 198 Pfam SET domain 111 186 IPR001214 GO:0005515
Seca4g01987 198 ProSiteProfiles SET domain profile. 64 186 IPR001214 GO:0005515
Seca4g01987 198 SMART set_7 64 192 IPR001214 GO:0005515
Seca4g01987 198 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 18 196 - -
Seca4g01987 198 SUPERFAMILY SET domain 57 186 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01987 Seca-Chr4 33495468 33496615 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca4g01987 SET 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01987 K24406 - csin:114285345 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01987 4 33495468 33496615 Seca4g01987 4 33495468 33496615 ECH