Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01983 ATGATCACCAGAAAACCCACTAAACCCTTCACCTTCCTCCCTATCTCCAGATCCACCCTCCTCATCCTCCTCTCCATGGCATCCCTTCCTTTTTTCTTCTTTCTCCTCTTCCTCTCCCATTCCACCGCCATCCACCACCCAAGGCTCCTCCCTGAACAACCACACTCCCAGGAGATCCAACAAGCCTGCAAGGCCACTCGTTTCCCTCACCAATGCCATTCCTCTCTCTCCCAATCCAACAACCTCCCCCGCGACCCAACCCCTCTCCAAATAATCCAATCCGCCATGGAAGTTTCCTCTCAAAACCTAGACACCGCGCGATCCATGTTGCGGTCCATCCTGGACGCGTCCGCAGGTAACCGCACCCTCACCAATGCCGCCAAGAACTGCCTCAAGGTTCTCCATTACTCCCATTACCGAACCTCCCACGCCACTGATGCTCTCCCACGTGGCAGGACCAAGGACGCACGTGCCTGGATGAGCGCTGCCTTGGCTTACCAATATGGCTGCTGGTCCGGCCTCAAGAACCATAACCACACCGCATTGGTTGCTGAAACGATGTCGTTTCTAGACTCCCTCACGGGACTCTCTAGCAATGCCCTCAGCATGATGGTTTCCTATGACATATTCGGAAACGACACCGCTTCCTGGAGGCCTCCACTAACGGAGCGTGACGGGTTCTGGGAGGAGTCCGGGTCGGGTGGTGTCGGGTCTGGACCATTGTTGCCCGCGAAATTGACGGCGGACGTTACGGTGTGTAAGGATGGGGGCGATGGCTGTTACGGGACGGTGCAGGAAGCAGTTGATGCGGCGCCGGATAATGTTGAGGTAGGGGAACGGAGGTTTGTGATACATATAAAGGAAGGGGTTTATGAGGAAAGGGTTAGGGTTCCGTTGAGGAAGAGGAATGTTGTGTTCTTGGGCGATGGCATGGGTAAGACTGTGATCACAGGCTCTGCAAACGTGGGGCTGCAACCGGGGATGACGACCTATGACTCTGCCACTGTAGGGGTTCTTGGGGATGGATTCATAGCAAAGGATCTCACTTTCCAAAACACGGCCGGTCCTAATGCTCACCAAGCAGTAGCCTTCAGATCAGACAGTGATCTTTCTATCATTGAGAATTGTGAATTCTCAGGCAATCAGGACACACTTTATGCTCATTCCCTGCGCCAATTTTACAAATCTTGCCGTATCCTGGGCAATGTGGACTTCATCTTTGGAAACTCAGCATCAATCTTCCAAGACTGTGAAATCCTAGTCCGGCCCAGGCAAGCCAGGCCTGAGAAGGGTGAGAACAATGCCATTACTGCACATGGCAGGACAGACCCTGCTCAGTCAACAGGGTTTGTTTTCCAGAACTGCTTGATTAATGGTACTGAAGAATATATGGCATTGTATCATAGCAAGCCTAAAGTACACAGGAACTATCTGGGTAGGCCATGGAAGGAGTATTCTAGAACAGTTTTCATTCATTCATTCTTGGAAGTCCTTATCACACCACAGGGTTGGATGCCATGGAGTGGGGACTTTGCACTGAAAACACTTTACTATGGGGAATTTGAGAACTCGGGACCAGGTTCTAATTTGACTCAGAGGGTGCCCTGGAGCAACCAGGTCCCAGCTGAGCATGTGTTCACGTATTCAGTGCAGAGTTTCATTCAAGGAGATGATTGGATTCATCATCTCAGTAATTAG 1698 0.5153 MITRKPTKPFTFLPISRSTLLILLSMASLPFFFFLLFLSHSTAIHHPRLLPEQPHSQEIQQACKATRFPHQCHSSLSQSNNLPRDPTPLQIIQSAMEVSSQNLDTARSMLRSILDASAGNRTLTNAAKNCLKVLHYSHYRTSHATDALPRGRTKDARAWMSAALAYQYGCWSGLKNHNHTALVAETMSFLDSLTGLSSNALSMMVSYDIFGNDTASWRPPLTERDGFWEESGSGGVGSGPLLPAKLTADVTVCKDGGDGCYGTVQEAVDAAPDNVEVGERRFVIHIKEGVYEERVRVPLRKRNVVFLGDGMGKTVITGSANVGLQPGMTTYDSATVGVLGDGFIAKDLTFQNTAGPNAHQAVAFRSDSDLSIIENCEFSGNQDTLYAHSLRQFYKSCRILGNVDFIFGNSASIFQDCEILVRPRQARPEKGENNAITAHGRTDPAQSTGFVFQNCLINGTEEYMALYHSKPKVHRNYLGRPWKEYSRTVFIHSFLEVLITPQGWMPWSGDFALKTLYYGEFENSGPGSNLTQRVPWSNQVPAEHVFTYSVQSFIQGDDWIHHLSN. 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01983 565 FunFam Probable pectinesterase/pectinesterase inhibitor 51 57 206 - -
Seca4g01983 565 PANTHER PECTINESTERASE 32 561 - -
Seca4g01983 565 NCBIfam pectinesterase inhibitor domain 28 202 IPR006501 GO:0004857
Seca4g01983 565 CDD PMEI-like_3 62 204 - -
Seca4g01983 565 SUPERFAMILY Pectin lyase-like 247 562 IPR011050 -
Seca4g01983 565 Pfam Pectinesterase 249 557 IPR000070 GO:0030599|GO:0042545
Seca4g01983 565 FunFam Pectinesterase 243 565 - -
Seca4g01983 565 SMART PMEI_2 54 203 IPR006501 GO:0004857
Seca4g01983 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 206 IPR035513 -
Seca4g01983 565 Pfam Plant invertase/pectin methylesterase inhibitor 58 203 IPR006501 GO:0004857
Seca4g01983 565 Gene3D - 243 564 IPR012334 -
Seca4g01983 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 203 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01983 Seca-Chr4 33467249 33469345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01983 51 559 Carbohydrate Esterase AT5G09760 66.342 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01983 - - gmx:100802102 852.818