Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01980 ATGAGTGGAAGTGGCAGAAAGCGCTCTTCAAAGTGGGATATTATGAGAGAAGGGCCTGAATTTGCACCTGGTAGTAAGCAATTGCGGTCTGGGTGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCGAAATGGTCTTATTCAGAAGGAAATGATAAATTAAAACCTGGTACAGGACTTTCATCCAAGGAATCCTTTTCTGGAGGTAGAGGTTCAAGTAAGGATGATATTATGAATAAAGACTATAGAGTCATGGACGAAACAATGGAATGGGACAATGATGGAAGTTACAGCAAGAAAATGTCTCCTCGGGTTGAGGAAAGGAAACAAAAGAGACACAGTCAATCACCCAAAAATGATTGGAGCAGGAGTCGTAGCAGGAGCCCTCATGGTTTTAGGTGGGATGCAGGAGTCAATGACAGAAATAGAATGAGGGTTGGAGGATCGACACAACCATGCAGAGATTTTGCTGCTGGTAACTGCAGAAGAGGAAGCCTTTGCAATTTTCTTCATCATGATAATGAAAATCATGAGAATAGTTGGGAAAGTAAGCACCAGGAAGATGGAGATCCCAGATATTCTGCTATGCACGAGAGTAGGGACCATTCTTTTAAGAGTGGCAGATCTAATGAAGCTTGCATTAATTTTGCAAAAGGCAGGTGTAGAATGGGAGCGTCATGCAAGTATGTGCATCATGACAATTCTGATGGATATGGTAAATTTTCTGTGGATGAGTTTGCTAGAGAAAAGGAAACAGATAGAAGGCGCAGAGATAGTTCTTTTGAGCAGGGTGGTGGGCATGGGCCAAACCGCAGTGGTGATACTCCTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATATAGGAGCCCCAATAGAAGATTAAGGGATGATAGATGGGCAAGCAATCCAGGTGGAGATCATCAGATGTTGGATAGACCAAAATTGAGTGATTCTGTTAGTCCTAATCGAAGGGTAAGAGATGATAGGTGGGGTTCAGATGGCAATATGGCTGATGCAGATAAAGTTAGAGAGTCTCCAAAGCGGAATGATACTGGTGTTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGGAAATGTAGGTGCTACTGAGCCAGGATTCAGTGCTTGGCCTATGAAGGATGGATGGGGTCATGATTTAGATAAAAGCAGGGTGCATGGCGAACCACCATTTTTTAGTGATAAAAAGGAAGCTGACCATTACATAGCAGAAAATACTGGTGCCAACGTGCACAGTTCCCAGGCAATAGGTACAGATATTTGGTTGGGTGATGCAAAAATGTCTCCTGATTGGAATTATAGGGTGGGATCTTCCAGCCATATTGAAGAGCATGGACAGAATAAGCATGGGATAACCCAGGGCGGTGTGTATTTAGCCACCTCTGAACAGGATAGAGTACAAGTTGCTCCAGGACAAGACTTCAATCAGAATGCACCCAATGTAAATCCTTTGCATTCTTCAAGCTGCCATGCAGTTGGACAAAGTCAAGTGGCAATTCCCATTCTTCCTTCAAGAGGAGGCATTGTTGATAGTGCACCAAAGCAAGAAGTCTCAACAGAGAAAAAATACACCGTTGAGCCAAATATTATGGATGCAGGCTTATCACAAGTTAGTTCAAGAAATCCTCCAACTCAGAACGCTGTAAGCACAGAACAGCTTGCTCAACTTACCAATCTCTCAGCCTCTCTGGTTCATATCCTTGGAACAGGTCAGCAGCTGCCGCAGCTTTATGCTGCTTTAAATTCACATGATCTAAAAGACATTCCTTCCCTAGCAAAAACTGAAGTGCCTGCTGTGCCTGTTTCCAATACTTTTATCAAGCCAGATCTAGCTGTGGGACTCCCCAAGCAGTATGATCCAATGTATGATAGTATTGAGCTAAAGAATGCTGATACAAGTGGGGTGCCTCCAGCCATTCCTCCAACTAAAAATGTTGCAGGAGATGAAGCAGAAATTCCATCGCAGTTGTCTAACTCAGGAAGACAAAATTGTGGTGATTCTATTAAGGCTGCCTCCTCAGAACTTGTCAAGAGTGGTCATCTAATCCAGTTGCAGCCAGGTCAAAACACTGAGGTTAATAACGATAACAATGAAGTGGTAGCTGAGGAAAGACAAAATTCTCAAGATGATCATAAAAGTACAAAAGAGAATGGTCCTTTGGAAAACGTGGACCAAAATGGCGGGCCTGATGAGGCCAAGAAAACAAAGGATATGAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACTAAAGAAGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTAGTACAATGCAGAGCAATATTCCTCAGACACAAGAGAAGATTGACCACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGATTCAGAAGGCTTAG 2529 0.4215 MSGSGRKRSSKWDIMREGPEFAPGSKQLRSGWSSADVAGSNSSKWSYSEGNDKLKPGTGLSSKESFSGGRGSSKDDIMNKDYRVMDETMEWDNDGSYSKKMSPRVEERKQKRHSQSPKNDWSRSRSRSPHGFRWDAGVNDRNRMRVGGSTQPCRDFAAGNCRRGSLCNFLHHDNENHENSWESKHQEDGDPRYSAMHESRDHSFKSGRSNEACINFAKGRCRMGASCKYVHHDNSDGYGKFSVDEFAREKETDRRRRDSSFEQGGGHGPNRSGDTPCKFFANGNCRNGKYCRFSHDRQAYRSPNRRLRDDRWASNPGGDHQMLDRPKLSDSVSPNRRVRDDRWGSDGNMADADKVRESPKRNDTGVVSDTAKLVEDKSGNVGATEPGFSAWPMKDGWGHDLDKSRVHGEPPFFSDKKEADHYIAENTGANVHSSQAIGTDIWLGDAKMSPDWNYRVGSSSHIEEHGQNKHGITQGGVYLATSEQDRVQVAPGQDFNQNAPNVNPLHSSSCHAVGQSQVAIPILPSRGGIVDSAPKQEVSTEKKYTVEPNIMDAGLSQVSSRNPPTQNAVSTEQLAQLTNLSASLVHILGTGQQLPQLYAALNSHDLKDIPSLAKTEVPAVPVSNTFIKPDLAVGLPKQYDPMYDSIELKNADTSGVPPAIPPTKNVAGDEAEIPSQLSNSGRQNCGDSIKAASSELVKSGHLIQLQPGQNTEVNNDNNEVVAEERQNSQDDHKSTKENGPLENVDQNGGPDEAKKTKDMKGIRAFKFALVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTSTMQSNIPQTQEKIDHYLSFSKPKLNKLVQAYVEKIQKA. 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01980 842 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 841 - -
Seca4g01980 842 MobiDBLite consensus disorder prediction 721 757 - -
Seca4g01980 842 MobiDBLite consensus disorder prediction 176 206 - -
Seca4g01980 842 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 172 IPR000571 GO:0046872
Seca4g01980 842 SMART c3hfinal6 147 173 IPR000571 GO:0046872
Seca4g01980 842 SMART c3hfinal6 208 233 IPR000571 GO:0046872
Seca4g01980 842 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Seca4g01980 842 ProSiteProfiles Zinc finger C3H1-type profile. 147 174 IPR000571 GO:0046872
Seca4g01980 842 MobiDBLite consensus disorder prediction 247 262 - -
Seca4g01980 842 MobiDBLite consensus disorder prediction 74 137 - -
Seca4g01980 842 MobiDBLite consensus disorder prediction 247 277 - -
Seca4g01980 842 MobiDBLite consensus disorder prediction 1 137 - -
Seca4g01980 842 MobiDBLite consensus disorder prediction 27 49 - -
Seca4g01980 842 MobiDBLite consensus disorder prediction 323 363 - -
Seca4g01980 842 MobiDBLite consensus disorder prediction 302 388 - -
Seca4g01980 842 Pfam RNA-binding, Nab2-type zinc finger 212 231 - -
Seca4g01980 842 Gene3D - 266 323 - -
Seca4g01980 842 MobiDBLite consensus disorder prediction 723 739 - -
Seca4g01980 842 ProSiteProfiles Zinc finger C3H1-type profile. 207 234 IPR000571 GO:0046872
Seca4g01980 842 Gene3D - 145 243 - -
Seca4g01980 842 ProSiteProfiles Zinc finger C3H1-type profile. 271 298 IPR000571 GO:0046872
Seca4g01980 842 Pfam CCCH-type zinc finger 276 296 IPR041367 -
Seca4g01980 842 SUPERFAMILY CCCH zinc finger 274 296 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01980 Seca-Chr4 33393777 33400830 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g01980 zf-CCCH 1.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01980 - K22909 gmx:100783856 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01980 4 33393777 33400830 Seca4g01980 4 33393777 33400830 ECH