Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01979 ATGGATTTCAATCAAAACACCACCACCACTACTTCTACAACTACATTCACGAATGTTAACAGCACTTGGAATCTTGATGAGAAGATGGAAACAGGTCATCATCAACATAACACAATTCTCCATCCTCATCATCATCAAATTCCTATGGATTCTGGAATTAATTGGCCAAACTATCACCATCCTCTTCAGATATCATCCTCATCCAGTGTAGTAGTACCCTCACCCTCTGCTTCTTCTTCAGGTTTCTTGAATGACATATTAGGCACTCACTTTGAAGAAGATGAAGAGGCGGAAGAAGAGTTAGGAGCGATGAAGGAGATGATGTACAAAATCGCTGCTATGCAGCCTGTGGATATCGATCCTGCAACCATCAGAAAACCAAAGAGGAGAAATGTTCGCATAAGCGATGATCCACAGAGTGTGGCTGCACGTCACAGGCGTGAGAGGATAAGTGAGAAAATCCGAATCCTTCAAAGACTCGTCCCTGGTGGAACCAAAATGGACACTGCTTCTATGCTTGATGAAGCTATTCGCTATGTCAAATTCCTAAAGAGACAAATCAGGTTGCTTCAATCAACCCCTCCACATTCCCAACAACCACCAAATTGCATTGTTACTCCTACTCCTAATCCTAACGCTTTATTGTTAGCCACAAGCGGTTATTGGCCAGCTTTTGCACCAAATATAACTGCCACCACTACTACTACTCCCTCTTCCTCCATGGATTTTCCAGCTGGAGTGGAATTCAACACCAGAGGACATGGTGATGGCTCATCCTGTTTTAGCCATCATGAGGTAATTAGTGATTAA 810 0.4296 MDFNQNTTTTTSTTTFTNVNSTWNLDEKMETGHHQHNTILHPHHHQIPMDSGINWPNYHHPLQISSSSSVVVPSPSASSSGFLNDILGTHFEEDEEAEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPPHSQQPPNCIVTPTPNPNALLLATSGYWPAFAPNITATTTTTPSSSMDFPAGVEFNTRGHGDGSSCFSHHEVISD. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01979 269 FunFam BHLH transcription factor 137 200 - -
Seca4g01979 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 196 IPR036638 GO:0046983
Seca4g01979 269 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 211 IPR045843 GO:0003700|GO:0006355
Seca4g01979 269 Gene3D - 137 199 IPR036638 GO:0046983
Seca4g01979 269 Pfam Helix-loop-helix DNA-binding domain 144 183 IPR011598 GO:0046983
Seca4g01979 269 CDD bHLH_AtIND_like 135 192 - -
Seca4g01979 269 SMART finulus 140 189 IPR011598 GO:0046983
Seca4g01979 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01979 Seca-Chr4 33367482 33369033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01979 103 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.107 6.81e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g01979 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01979 - - gmx:100777351 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01979 4 33367482 33369033 Seca4g01979 4 33367482 33369033 ECH
Seca12g06273 12 154630028 154630702 Seca4g01979 4 33367482 33369033 PCT