Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01978 ATGGCTTCTAAGATGTTATTCTTGCTATTTCTCCTTATCTTTCTAGCACACCCTCCTCATCCATTTGCATTTGTGAATGGAGACACCACTTTGATCAAGAAAACTTGCAAGAACACAAAGTACTACAGTCTCTGTGTCTCTTCCCTTAAATCTGATCCTAGCAGTCCAAACGCAGATCCTAAGGGCCTAGCAGTGATCATGGTAGGGATTGGAATGACCAATGCCACCTCCACTTTTTCATACTTGTCCTCTAAATTGCTTAGCCCTTCCAACAACACAACCTTGAAAAGGGTCCTTAAAGAGTGTGCAGATAAGTACAATTATGCTGGTGATGCCCTTCAAGCTTCAGTTCAGGATTTGGCTAATGAGGAATATGACTATGCTTACATGCACATTACTGCTGCCAAAGATTACCCAAATGCTTGTCACAATGCATTCAAAAGGTACTCTGATTTGGTTTATCCTACTGAGCTTGCTCATAGAGAAGTTGGTTTGAAGCATATCTGTGATGTGGCAATGGGGATTATTGATAATCTCAATTGGTAG 546 0.4103 MASKMLFLLFLLIFLAHPPHPFAFVNGDTTLIKKTCKNTKYYSLCVSSLKSDPSSPNADPKGLAVIMVGIGMTNATSTFSYLSSKLLSPSNNTTLKRVLKECADKYNYAGDALQASVQDLANEEYDYAYMHITAAKDYPNACHNAFKRYSDLVYPTELAHREVGLKHICDVAMGIIDNLNW. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01978 181 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 179 IPR035513 -
Seca4g01978 181 Pfam Plant invertase/pectin methylesterase inhibitor 31 174 IPR006501 GO:0004857
Seca4g01978 181 FunFam Cell wall / vacuolar inhibitor of fructosidase 2 27 179 - -
Seca4g01978 181 NCBIfam pectinesterase inhibitor domain 5 179 IPR006501 GO:0004857
Seca4g01978 181 PANTHER PECTINESTERASE INHIBITOR-LIKE 4 179 - -
Seca4g01978 181 SMART PMEI_2 27 175 IPR006501 GO:0004857
Seca4g01978 181 CDD PMEI_like 36 178 - -
Seca4g01978 181 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 179 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01978 Seca-Chr4 33324157 33324702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01978 29 124 Carbohydrate Esterase AT1G53840 28.125 5.22e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01978 - - gmx:100306461 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01978 4 33324157 33324702 Seca4g01978 4 33324157 33324702 ECH