Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01968 ATGGAGAATGAGAATGGGGTTAGCGTTCCAAGGTCTCAAAACAAAGAGAGACTTGCTATTTTGGAACTAGCTCACATGATGAGTGTCCCAATGTCTCTCATAGCAGTCCTCAATCTCAAGGTCCCCGACGCCATCTGGCAAGATGGTTCTAACACTCCACTCTCCGCCTCTCAGATTCTTGCCATCGTTAGTCCCCATGACGGTGGCGACCCCGAGAATCTCCAGCGCATCCTCCGCTTGCTCACCACTTATGACATTTTCATTGAGCACTTGAGCAGCAATGGCGAAAGGAAATATTCCCTCACTAACATAGGCAAAACTCTTGTCCCCAATCACGAAGGTCTATCCTACGGACCTTACTTCCTCCAACACCATCAGGATGCATTGATGAGAACATGGCCGTTGGTGGAGGAGGCAGTGAAAGATCCAGGGACAGAGCCATTCATAAAGGTGAATGGAGAGTCAGCGTTTCCGTATTATGATGAACGCCCAAATGAGAACACTTTGTATTGTAAAGCAGTGGCTGGGATGTCGATTCCCCATATAAGAGAAATGTTGGAGCTCTATGATGGTTTTCAAGGGGTGGAGACACTAGTTGATGTTGGTGGCAATTCTGGTGTGTGTCTCCGCATTATCATGGAGAAGTACCCTACCATACGCAAGGGCATTAACTATGATTTGCCTCATATGGTGGCCTCTGCGCCACACATTCCAGGTGACAAATCTCGTCAAATATTGCTGTGA 744 0.4758 MENENGVSVPRSQNKERLAILELAHMMSVPMSLIAVLNLKVPDAIWQDGSNTPLSASQILAIVSPHDGGDPENLQRILRLLTTYDIFIEHLSSNGERKYSLTNIGKTLVPNHEGLSYGPYFLQHHQDALMRTWPLVEEAVKDPGTEPFIKVNGESAFPYYDERPNENTLYCKAVAGMSIPHIREMLELYDGFQGVETLVDVGGNSGVCLRIIMEKYPTIRKGINYDLPHMVASAPHIPGDKSRQILL. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01968 247 Gene3D - 4 113 IPR036388 -
Seca4g01968 247 Pfam O-methyltransferase domain 136 237 IPR001077 GO:0008171
Seca4g01968 247 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 237 IPR029063 -
Seca4g01968 247 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 247 IPR016461 GO:0008168
Seca4g01968 247 PANTHER O-METHYLTRANSFERASE 23 241 IPR016461 GO:0008168
Seca4g01968 247 SUPERFAMILY "Winged helix" DNA-binding domain 15 111 IPR036390 -
Seca4g01968 247 Gene3D Vaccinia Virus protein VP39 114 244 IPR029063 -
Seca4g01968 247 Pfam Dimerisation domain 31 82 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01968 Seca-Chr4 33087471 33095324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01968 1 239 Monolignol Biosynthesis Gene Families AT3G53140 55.556 1.37e-93 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01968 - - ccaj:109819366 320.857