Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01966 ATGCGAGCATGGCCGTTGGTGGAGGAGACGGTGAACGATCCAAGGACGGAGCCATTCAAGAAGGCGAACGGAGAGTCAGCAATAGAGTACTGCATGAAACGGCTAGATTCAATGAGTTTGATTTATAAGGCAATGGTTGGGATGTCGGTGCCCTTTATGAGAGAAATGTTGGAGCTCTATGTCTATGATGGCTTCCGAGGGGTGGAGACACTAGTTGACGTTGGTGGCAATTCTGGTGTTTGTCTCGGCAAGATCATGAACAAGTACCCAAGTATACGCAAGGGCATCAACTATGATATACCTGATATGCTGGCCTCTGCACCACACATCCAAGGTCACTATTTTTTTCCTTAA 354 0.4718 MRAWPLVEETVNDPRTEPFKKANGESAIEYCMKRLDSMSLIYKAMVGMSVPFMREMLELYVYDGFRGVETLVDVGGNSGVCLGKIMNKYPSIRKGINYDIPDMLASAPHIQGHYFFP. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01966 117 PANTHER O-METHYLTRANSFERASE 4 115 IPR016461 GO:0008168
Seca4g01966 117 Pfam O-methyltransferase domain 7 109 IPR001077 GO:0008171
Seca4g01966 117 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 3 110 IPR029063 -
Seca4g01966 117 Gene3D Vaccinia Virus protein VP39 1 117 IPR029063 -
Seca4g01966 117 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 117 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01966 Seca-Chr4 32991074 32991427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01966 1 112 Monolignol Biosynthesis Gene Families AT3G53140 50.893 3.20e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01966 - - ccaj:109819366 141.739