Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01963 ATGGCCGAAACAAAATTGATTCCAGGGTTTCGGTTTCATCCCACTGACGTTGAGCTGGTTAAGTACTTTCTGAAGAGGAAGGTTCTGGGTCGAAAATTCCCTTTCGATGTCATTGCTGAAATTGACATATACAAGTATGCTCCGTGGGATCTCCCAGATAAATCTTTGCTCAGAACTGGGGATTTAGAATGGTACTTCTTTTGCCCTCGTGGAAAGAAATATTCCAGTGGAGGGAGGATGAATCGAGCAATGGAAATTGGGTACTGGAAGACTACTGGGAAGGATAGGTCAATTGAACACAAAAACCAAGTCGTGGGGATGATAAGAACCCTGGTATTTCACACTGGCAGAGCCCCTAAGGGAGACCGAACTGATTGGGTCATGCATGAATTCAGACTTGAAGACAAAGACCTTACTGCCAAAGGCATTCCACAGGATTCCTATGTGATTTGTAGGGTATTCCAGAAGGAAGGTCCTGGTCCCAGAAATGGTGCACAATATGGAAAGCCATTTAATGAGGAAGACTGGGACGAAGACGAAATTGGTTGTGTCCAAACTGTCCCTCTTGCTGCTATATCTCCACAAGTTCCCATTCTACCTAGTGCAAGTCATATTTCTGTTGCAAATGACATGCATCCCTCTATAAGTGGATGCATTGGATTGACCTCTGTATCATGTCTATCAGGATTGATGCCGTCTTGCTCAACAGATCCTTCAGCTCCAAGCAATCAACTTGATGACAACATTTTATCTATGCTTGACTTATTCAAAGAAGATGATAACACATTAGCTGTGAATGAAAGCAATGGAATCAAGAACGTTGATAATCCTGGTCAGGCAAATAATGCTGAGGGCGCACCTTCTTTAGATCCAAATAAGATTTTTGAGGACTTAGGAGACCTTGACGGCTTGGTTGGATTAGGTGAAGGACACGGGTTTTCCTGGGGCCAAAAAGATGAATATACTACAAACGGAATGCTTTCTACGTGCGATGCCTCGGGCTCTTGGGACCCCCAAGACTTCTTGGAGTTGATTGACCTAGAGGTGCCATTGTTATGGCAGACTACACAAGAAGGAAATTGGAGCCAAGATAAGGAAGGTTAG 1104 0.4393 MAETKLIPGFRFHPTDVELVKYFLKRKVLGRKFPFDVIAEIDIYKYAPWDLPDKSLLRTGDLEWYFFCPRGKKYSSGGRMNRAMEIGYWKTTGKDRSIEHKNQVVGMIRTLVFHTGRAPKGDRTDWVMHEFRLEDKDLTAKGIPQDSYVICRVFQKEGPGPRNGAQYGKPFNEEDWDEDEIGCVQTVPLAAISPQVPILPSASHISVANDMHPSISGCIGLTSVSCLSGLMPSCSTDPSAPSNQLDDNILSMLDLFKEDDNTLAVNESNGIKNVDNPGQANNAEGAPSLDPNKIFEDLGDLDGLVGLGEGHGFSWGQKDEYTTNGMLSTCDASGSWDPQDFLELIDLEVPLLWQTTQEGNWSQDKEG. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01963 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 231 - -
Seca4g01963 367 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Seca4g01963 367 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Seca4g01963 367 FunFam Nac domain-containing protein 86 15 159 - -
Seca4g01963 367 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Seca4g01963 367 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01963 Seca-Chr4 32953927 32957843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01963 1 268 NAC Transcription Factor Family AT5G09330 50.519 9.16e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g01963 NAM 5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01963 - - adu:107470479 503.056