Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01956 ATGGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGGTAAAAAGTGTGAAGTTTATGGCCAAAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCAAATGTTCTAAAGCTTGAGGGCTTAGTTACTTCAAGAATATCATCGAGTCTTTATTTGGTTTTTGAGTACATGGAACACGATCTTGCTGGCCTTGCAGCTGGCCTTAGTGTCAAATTCTCTGAGCCTCAGGTGTTGTGA 237 0.4008 MVALKKVRFDNLEVKSVKFMAKEILVLRRLDHPNVLKLEGLVTSRISSSLYLVFEYMEHDLAGLAAGLSVKFSEPQVL. 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01956 78 SUPERFAMILY Protein kinase-like (PK-like) 1 77 IPR011009 -
Seca4g01956 78 ProSiteProfiles Protein kinase domain profile. 1 78 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01956 78 FunFam Putative serine threonine-protein kinase 20 63 - -
Seca4g01956 78 Pfam Protein kinase domain 2 64 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01956 78 PANTHER CELL DIVISION PROTEIN KINASE 1 69 - -
Seca4g01956 78 Gene3D Phosphorylase Kinase; domain 1 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01956 Seca-Chr4 32829318 32829554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01956 1 77 Core Cell Cycle Gene Families AT5G10270 39.130 2.42e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca4g01956 Pkinase 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01956 K08819 - gmx:100802680 134.806