Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01955 ATGCCCACTTGGTGGGGTAGAAAATCCAGCAAGAGCAAGGACCAGGTGCAGGAAGAGGAAGCACGTGGTGGCGGCGGCGGTGGCGTGCTTCAATTCAATTTCATCAAGTCTCCGATCAAGAACGCTGCAAAGAAAGGGAAAGGTGAAAGGCCTAAGAGTTTTGACGATGCTGCTAGGAATTCTCCAAGGACAAGCAGGGATTTCTCTTCTTCTTCTGCTTGCTTTGATTCTGATGGCGGCGAGAAGAGAGGCCTTCCTTTGCCTCGACCCTCTGTTTCTTCCACCCAAAGCTTTGGCAACGATCAGGGTCTTGTTTTCGGATCTGCTTCCGTTTCTGGTTCTAGCGTTAGCTCCACTGGCTCCTATGATGATCATCCAACCTATCACTCTCAGATTAATGGCTCAAGAGGACAAGGTGACTTGAAGTTCAATGTGAGGTCTAAAAGCCCAGGTCCTGGATCAAGAGGGCCAACCAGCCCTACATCACCTCTTCATCCAAGGTTGCATGTTTTGAGTCTTGACTCCCCTACAGGCAGGCAAGAAGATGGAAGGAGTCAATGTCATCCATTGCCTCTTCCACCAGGCTCTCCTACTAGTCCTTCTTCTCTTTCCAACACAAGAGCAAATGGACAACTAGAAAACACTACCGGTAACATTTGCAAGTGGAAGAAAGGAAAGCTCCTAGGACGGGGAACATTTGGGCACGTTTACTTGGGATTCAATAGTGAAAGTGGACAATTGTGTGCAATTAAAGAAGTTAGGCTTGTCTCTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATACATTTGCTTCGTCAGCTTTCACATCCAAACATTGTTCAATACTATGGGAGTGATTTGGGAGAAGAAGCACTTTCTGTTTATTTGGAATATGTCTCTGGCGGTTCTATTCATAAATTACTTCAGGAATATGGGCCCTTCAAGGAGCCTGTAATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTTCCTATCTTCATGGGAGAAATACAGTGCATAGGGATATCAAAGGGGCCAACATACTAGTTGATCCTAATGGCGAAATTAAGCTTGCGGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCAATGCTTTCTTTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCGAAGCCTCCATGGAATCAGTATGAAGGGGTGGCTGCAATATTTAAAATTGGTAACAGCAAAGATATGCCAGAAATTCCTGATCACCTCTCAAATGATGCGAAGAATTTCATTATGCTATGCTTACAAAGAGATCCATCAGCTCGCCCAACAGCCCAAATGTTACTAGATCACCCCTTTATTCGAGATCAGTCAGCAACAAAAGCTACAAATGTCAGAATAACAAGGGATGCTTTTCCCTACATGTTTGATGGAAGCCGGACACCACCGCCAGTTTTAGAGCATCATTCCAATAGAACAAGTATAACTTCACTGGATGGAGATTATGCAACAAAGCCAGCTATTGCAGCTTCACGAGCAATAAGGAGCCCAAGAGATAACACAAGAACGATCACATCTTTACCAGTGTCACCCTGTTCAAGTCCATTACGACAATATGGGCCGGCACACAAGAGCTGTTTCCTTTCTCCTCCTCATCCAACTTACACAATGATGGGACAACACACCCTCTCCTCATATCCTTTGAGATCAAATGCCAATGCCACGTTCACACTTGATCCTTGGCATGAAACATCTTTATACAAACCCCACACACCCGGTGGATCCCCAAGAACGAGACTCATTTGA 1878 0.4452 MPTWWGRKSSKSKDQVQEEEARGGGGGGVLQFNFIKSPIKNAAKKGKGERPKSFDDAARNSPRTSRDFSSSSACFDSDGGEKRGLPLPRPSVSSTQSFGNDQGLVFGSASVSGSSVSSTGSYDDHPTYHSQINGSRGQGDLKFNVRSKSPGPGSRGPTSPTSPLHPRLHVLSLDSPTGRQEDGRSQCHPLPLPPGSPTSPSSLSNTRANGQLENTTGNICKWKKGKLLGRGTFGHVYLGFNSESGQLCAIKEVRLVSDDQTSKECLKQLNQEIHLLRQLSHPNIVQYYGSDLGEEALSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPDHLSNDAKNFIMLCLQRDPSARPTAQMLLDHPFIRDQSATKATNVRITRDAFPYMFDGSRTPPPVLEHHSNRTSITSLDGDYATKPAIAASRAIRSPRDNTRTITSLPVSPCSSPLRQYGPAHKSCFLSPPHPTYTMMGQHTLSSYPLRSNANATFTLDPWHETSLYKPHTPGGSPRTRLI. 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01955 625 MobiDBLite consensus disorder prediction 89 142 - -
Seca4g01955 625 Pfam Protein kinase domain 223 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01955 625 SMART serkin_6 222 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01955 625 Gene3D Transferase(Phosphotransferase) domain 1 220 498 - -
Seca4g01955 625 ProSitePatterns Protein kinases ATP-binding region signature. 228 251 IPR017441 GO:0005524
Seca4g01955 625 CDD STKc_MEKK1_plant 221 478 - -
Seca4g01955 625 MobiDBLite consensus disorder prediction 42 62 - -
Seca4g01955 625 SUPERFAMILY Protein kinase-like (PK-like) 221 559 IPR011009 -
Seca4g01955 625 MobiDBLite consensus disorder prediction 1 212 - -
Seca4g01955 625 FunFam Mitogen-activated protein kinase kinase kinase 220 502 - -
Seca4g01955 625 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 73 486 - -
Seca4g01955 625 ProSiteProfiles Protein kinase domain profile. 222 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01955 Seca-Chr4 32811131 32817215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01955 1 542 MAP Kinase Kinase Kinase AT1G53570 59.386 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca4g01955 Pkinase 1.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01955 K04421 - gmx:100813122 972.23