Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01948 ATGGGAAGATCAAGCAGCAGCAGTAACAGTGAGAATAAAAAAAGTTGCAATAGAGGCCATTGGAGACCCTGTGAAGATGAGAGACTAAGACAACTTGTGAAGCAATATGGTCCCCAGAATTGGAATTTCATTTCTGAACACCTTGAAGGAAGATCAGGGAAAAGTTGCAGGTTGAGATGGTACAATCAACTAGACCCAAATATAATTAGAAATCCATTCACTGATGAAGAGGAAGAAATGCTCCTAGCACTTCACAAAGTGAAGGGAAACAAATGGGCTGCAATAGCTAGATTCTTCCCAGGAAGAACAGACAATGCTGTGAAGAATCACTTCCATGTGTTAATGGCCAGAAGGAAGAGAGAGTGCTTGGCATTGTTTGGTAATAACACAATTGGCCATAATTCAAGGATTAATTTTAACTTACAAAACTATAAAAACACAGGAATATTTGGTATGCAGTCTACTTCACAGACATCAACTCCTTATTGGACTCTCACAAGTGGTTCTTCAACAATCACATCAAGTTTTGATGCTTCTGGTGTAGGTAGTAGCATTAGCAAGGCTCACAAAGACTCAAAGTTTTCTTCAAGTGCTGGAGAGAAACCACATGATTTGAACCATTTTCCTTCAGCTGTAGGTTCTTCTTTTCTTGGCAGTTACAATAGTTTCACTGCCCCTGGACTTCCAAGTATTGGCAAAGTTGTTCCCCTTCCACATAAGTTCTTAAACTCTAATTATGGCCACAGAACTGAGGGCTCCAACACAGGTAAGCATCCACATGATAATTCCATGGTACTGTGTAAGTTGACTATGAACAGTACTCAAGAGCAAGAACAAACTGAACCTCTTAATCTCAAGCAAAAGGGTGTTTCTTCCTTCATAGACTTTCTTGGAGTAGGAAATTCTCCTGCCAGTGATGACAGTATTGGTGGACCATGA 939 0.4015 MGRSSSSSNSENKKSCNRGHWRPCEDERLRQLVKQYGPQNWNFISEHLEGRSGKSCRLRWYNQLDPNIIRNPFTDEEEEMLLALHKVKGNKWAAIARFFPGRTDNAVKNHFHVLMARRKRECLALFGNNTIGHNSRINFNLQNYKNTGIFGMQSTSQTSTPYWTLTSGSSTITSSFDASGVGSSISKAHKDSKFSSSAGEKPHDLNHFPSAVGSSFLGSYNSFTAPGLPSIGKVVPLPHKFLNSNYGHRTEGSNTGKHPHDNSMVLCKLTMNSTQEQEQTEPLNLKQKGVSSFIDFLGVGNSPASDDSIGGP. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01948 312 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Seca4g01948 312 SUPERFAMILY Homeodomain-like 17 111 IPR009057 -
Seca4g01948 312 Gene3D - 71 129 - -
Seca4g01948 312 CDD SANT 21 62 IPR001005 -
Seca4g01948 312 CDD SANT 72 115 IPR001005 -
Seca4g01948 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 119 IPR017930 -
Seca4g01948 312 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Seca4g01948 312 FunFam MYB transcription factor 18 69 - -
Seca4g01948 312 Gene3D - 9 70 - -
Seca4g01948 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Seca4g01948 312 PANTHER MYB PROTEIN-RELATED 18 204 - -
Seca4g01948 312 SMART sant 69 117 IPR001005 -
Seca4g01948 312 SMART sant 17 66 IPR001005 -
Seca4g01948 312 Pfam Myb-like DNA-binding domain 21 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01948 Seca-Chr4 32723914 32725624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01948 1 161 MYB Transcription Factor Family AT4G33450 56.818 1.25e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g01948 Myb_DNA-bind_6 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01948 K09422 - ming:122071877 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01948 4 32723914 32725624 Seca4g01948 4 32723914 32725624 ECH