Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01944 ATGAACGAAGCTCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCCATCAGTCTAGACTTGTTGGAAGATCCAGTAACTTTATGCACAGGACAAACCTATGACAGATCAAGCATAGAGAAATGGCTGGCTGCAGGTAATCTCACATGCCCTGTAACAATGCAGAAGCTTCATGATCCATCCATTGTTCCCAATCACACTCTCCGCCATTTGATAGATCAGTGGCTTCAACTTGGTCACCAATTTGACCCTGGCAACTCTGCAACAATCGATTATTTAGCTGCACTAAAACACAGCCTTGAATCTCCAGAGGCCACCTTAGAAAGCAAGCTTCAAGCACTTGAGAAGATTAGAGTTTTGTCTGATGAGTATTGTTCTTTCAAAAAATCTTGCTTCCAACAATTGGGTTTCTTGCCTCTTCTTTTGGGACTAGTTTTTCAAAGAGCAGATCCTCATCATCTCTCAAAAAATCACATGGAATTTGCAGAGTTAGCACTTTGTTGCATTCTAAAGTTGTTGCCTTTTGTCAGTTTGGAGCCTCTAAATATGATCAAAGAAGAGTCCAAGTTAGAAACATTCCTGCTATTATTTGAAAAAGGAACTAGCTTGGTTAAGATTAGTCTATGTCATCTTATAGATTCAACACCAGCATCACAAACAGAAGAGGTATGTCACATGCTTGGAAACTGTCAAAAACTAGTGCATGAGATTGTTCTAGCTGTTAGCCAAAATTGTGAGGTTTCCAAGGCTGCAATCAAAGCCATGACAGCATTATGCTCCTTGCAATCTAACAGGGAGAGTTTAGTTAGAGCAGGAGCAATAGATGGGATCATAAAATACATATCACTTTCAGTTTCAGGTTCTGAAACAAGACAGAAGAACTTGGCTCCGCTAGCAATGGTAACAATGAAGAAACTTTTGGTGCTAGAGAGTGGTAAAGAGGCAGTGGTGAATCACCCAAATGGGATTGAAACTTTGGTGAAGATGGTTTTCAGGGTAAGTAATCAAGAGTGTAGTGATAGTGCTGTTGGGATACTTTTAACTCTTTGTCGTGATTTTGGGCGTGCAAGAGAGGAAGCCATTGGGACAGGAGTTTTGACTCAATTGCTATTTCTTCTACAGAGCCAGTGTGGCACCAAAACAAAAACAAAGGCAAGAATGTTGCTCAAGTTGCTGAGATCCAAGTGGACTGAGGAACCAAAACAGGTGTAG 1215 0.4074 MNEAQIEITIPHLFRCPISLDLLEDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGHQFDPGNSATIDYLAALKHSLESPEATLESKLQALEKIRVLSDEYCSFKKSCFQQLGFLPLLLGLVFQRADPHHLSKNHMEFAELALCCILKLLPFVSLEPLNMIKEESKLETFLLLFEKGTSLVKISLCHLIDSTPASQTEEVCHMLGNCQKLVHEIVLAVSQNCEVSKAAIKAMTALCSLQSNRESLVRAGAIDGIIKYISLSVSGSETRQKNLAPLAMVTMKKLLVLESGKEAVVNHPNGIETLVKMVFRVSNQECSDSAVGILLTLCRDFGRAREEAIGTGVLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWTEEPKQV. 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01944 404 FunFam RING-type E3 ubiquitin transferase 10 81 - -
Seca4g01944 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Seca4g01944 404 SUPERFAMILY ARM repeat 97 380 IPR016024 -
Seca4g01944 404 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Seca4g01944 404 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Seca4g01944 404 SUPERFAMILY RING/U-box 6 78 - -
Seca4g01944 404 CDD RING-Ubox_PUB 11 58 IPR045210 -
Seca4g01944 404 PANTHER WDSAM1 PROTEIN 7 401 IPR045185 GO:0061630
Seca4g01944 404 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Seca4g01944 404 Gene3D - 90 403 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01944 Seca-Chr4 32651771 32652985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01944 8 399 U-box Gene Family AT3G19380 31.296 5.20e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01944 - - gmx:100815247 627.476