Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01941 ATGGCAGATCATGGAAGAAGCATCAACCTTCCTCCTGGGTTTCTTTTCTCTCCAACAGATGAAGAACTTGTCTGTCATTTTCTCTATTCTAAGGCTTCTCTTCTACCCTGCCATCCAAACATCATCCCTGATCTTCTCGATCACTACTCTCTACTGCCTGATCCTTGGGAATTAAATGGTAAGGCGCTGTCAAGTGGAAATCGATACTATTTCTTTACCAAAGTGAAGGGAAACAGATCCACAGAAAATGGGTATTGGAAGGAAACAGGTGTCACTGAAACTATATTGTCAGATGTTGACAAGAAAGTAGGAATCAAGAAGTACCTTGTGTACCACATTGGGGACCCTCCACATGATACTGAAACCAGTTGGGTGATGCAAGAGTATCATATTTGTTCCTCTGGGTTTGACAATGCATCTCATAAGGGAAGACGAAAACATGTGCGTGAGTGA 453 0.4238 MADHGRSINLPPGFLFSPTDEELVCHFLYSKASLLPCHPNIIPDLLDHYSLLPDPWELNGKALSSGNRYYFFTKVKGNRSTENGYWKETGVTETILSDVDKKVGIKKYLVYHIGDPPHDTETSWVMQEYHICSSGFDNASHKGRRKHVRE. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01941 150 PANTHER NAC TRANSCRIPTION FACTOR 56 10 133 - -
Seca4g01941 150 Gene3D NAC domain 19 149 IPR036093 GO:0003677|GO:0006355
Seca4g01941 150 ProSiteProfiles NAC domain profile. 10 150 IPR003441 GO:0003677|GO:0006355
Seca4g01941 150 Pfam No apical meristem (NAM) protein 11 131 IPR003441 GO:0003677|GO:0006355
Seca4g01941 150 SUPERFAMILY NAC domain 6 138 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01941 Seca-Chr4 32606069 32607354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01941 10 140 NAC Transcription Factor Family AT1G61110 41.727 8.16e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g01941 NAM 5.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01941 - - gmx:100170711 223.402