Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01940 ATGAAGAAACAAGGGTGTGAGATTGAGGCGACAGGCATCAACTACAAGATCCACACACAGACAACAGAACAATCTTTTAAAATCTTCAACAAACCTCCACAGTTGCATAGTGAAGAAGATGATGAGGAACCAGGGAATGAAGCAAAAGCTGAACAAAGATCATGCAGTGGAGTTACGCATGTCCTCAAGGATGTGAATTGCATTGCTAAGCCAAGGGAAATTCTGGCAATTGTTGGGCCAAGTGGAGCAGGAAAATCATCCCTGCTTGAGATTCTTGCTGGTAAAGTTAGTCCACAAAGTGGGTCTATCTTGGTGAACCAGGAGCCTGTAGATAAAGCTCAGTTTAGGAAGATATCAGGGTATGTTACACAAAAGGATACCCTGTTTCCCTTACTTACGGTTGAAGAAACCATCATGTTTAGTGCAAAGTTAAGGCTAAATCTTCCTCAACAACAACTATGCTCAAGGGTGAAGTCACTGATTCAGGAGCTTGGTCTTAGCCATGTTGCTAGGACTAGAGTTGGAGATGAAAGGGTCAGAGGAATATCTGGTGGTGAGATGCGACGAGTTTCCATTGGTGTTGAAGTTGTACATGATCCAAAGGTGCTAATTTTGGATGAAGCAACTTCAGGGCTTGATAGTACCTCAGCTCTGCAAATAGTTGATATGCTTAAAGTCATGGCTGAATCTAAGGGAAGGACTATTATCTTAAGTATCCATCAACCTGGGTTCAGAATAGTGAAGTTGTTAAATTCAGTACTATTGTTAGCTAATGGCTATGTGTTACATCACGGTACTGTGGATTTGCTGGGTGTGAATCTAAGGTTAATGGGATTAGAGCTTCCTCTACATGTTAATGTAGTTGAGTTTGCCATTGAATCCATTGAGACCATTCAACAACAACAAAAATGTAAGCAAGTTCAGCTAGAAGCACCACCACAACAATTACCAGGGAGAATGCAACAAAAGAAAGGTGATGATCAAGGTCAAAGTAGAAGTGGTAAGTTCACTCTGCAACAGCTCTTTCAACAATCCAAGGTAATTGATGTGGAAATCATCAATATGGGAATGGATTTCACTCGTGACTTTACTAATTCTAGATTGAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAAAACATCTTTCGTACAAAGGAGCTCTTTGCATGTAGGACAATTCAGATGCTGATTTCTGGGCTGGTTTTGGGCACTGTCTTTTGTAATCTCAAGGATGGTGTAGAGGGAGCAGAAGAAAGGGTGGGTCTATTTGCTTTCATTTTATCATTTTTGTTATCAAGCACCACAGAAGCTCTACCAATTTTTCTGCAAGAGAGGGAGATTCTAATGAGGGAGACCTCTAATGGAAGCTACAGAGTTTCATCCTATGCTATTGCCAATGGCCTAGTTTACTTGCCATTTCTACTCATACTAGCCATTTTATTCACACTGCCACTATACTGGCTTATTGGTCTCAACAGGAATTTCACAGCATTTCTGCATTTCTTGTTGCTAATATGGCTAATTCTTTATACAGCAAATTCTGTTGTGGTTTGTTTTAGTGCTCTGGTGCCTAATTTCATTGTTGGGAATTCAATGATCGCCGGTGTCATCGGTTCATTTTTCTTGTTCTCTGGCTACTTCATAACAAAACATGAAATTCCAAAATACTGGATTTTCATGCATTATGTGTCTCTATTTAAGTATCCCTTTGAAGGGTTTCTAATAAATGAGTTCTCCAACTCAAAGAAGTGCTTGGAGTACATGTTTGGGGCATGTGTGGTGACTGGAGAGGATGTACTTAAAGAAGCAGGGTTTGGAGGGGAGAGTAGTAAATGGAAGAATGTTGGGGTGATGGTGTGCTTCATCTTGCTTTACAGGTTCATTGCTTATGTAGTTCTTAGATACAGATGCTTCCAGAGTCTCACCCTCTGA 1935 0.4052 MKKQGCEIEATGINYKIHTQTTEQSFKIFNKPPQLHSEEDDEEPGNEAKAEQRSCSGVTHVLKDVNCIAKPREILAIVGPSGAGKSSLLEILAGKVSPQSGSILVNQEPVDKAQFRKISGYVTQKDTLFPLLTVEETIMFSAKLRLNLPQQQLCSRVKSLIQELGLSHVARTRVGDERVRGISGGEMRRVSIGVEVVHDPKVLILDEATSGLDSTSALQIVDMLKVMAESKGRTIILSIHQPGFRIVKLLNSVLLLANGYVLHHGTVDLLGVNLRLMGLELPLHVNVVEFAIESIETIQQQQKCKQVQLEAPPQQLPGRMQQKKGDDQGQSRSGKFTLQQLFQQSKVIDVEIINMGMDFTRDFTNSRLRETMILTHRFSKNIFRTKELFACRTIQMLISGLVLGTVFCNLKDGVEGAEERVGLFAFILSFLLSSTTEALPIFLQEREILMRETSNGSYRVSSYAIANGLVYLPFLLILAILFTLPLYWLIGLNRNFTAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSMIAGVIGSFFLFSGYFITKHEIPKYWIFMHYVSLFKYPFEGFLINEFSNSKKCLEYMFGACVVTGEDVLKEAGFGGESSKWKNVGVMVCFILLYRFIAYVVLRYRCFQSLTL. 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01940 644 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 283 IPR003439 GO:0005524
Seca4g01940 644 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
Seca4g01940 644 FunFam ABC transporter G family member 5 47 307 - -
Seca4g01940 644 Pfam ABC transporter 62 210 IPR003439 GO:0005524
Seca4g01940 644 MobiDBLite consensus disorder prediction 33 49 - -
Seca4g01940 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 269 IPR027417 -
Seca4g01940 644 MobiDBLite consensus disorder prediction 311 332 - -
Seca4g01940 644 MobiDBLite consensus disorder prediction 33 53 - -
Seca4g01940 644 SMART AAA_5 71 289 IPR003593 GO:0016887
Seca4g01940 644 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 12 631 - -
Seca4g01940 644 Gene3D - 49 322 IPR027417 -
Seca4g01940 644 Pfam ABC-2 type transporter 371 579 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01940 Seca-Chr4 32549170 32551104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01940 26 294 Calmodulin-binding Proteins AT2G36910 26.014 1.28e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01940 K05681 - gmx:121172640 1029.62