Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01934 ATGGAAGATGAGAGTCATAGCAATTTGCCAAATGGGCTCATCAAAGGAAGCCCAGAAAGCCCTTGCTCAAAGACATCCAACCCCACCACCACCATCACTCACAACAATAGCAACAACAAAGAACAAGATCGCTTTCTCCCTATAGCCAATGTGGGTAGGATCATGAAAAAAGCAATCCCAGCTAATGGCAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATTAGCTTTGTTACTGGAGAGGCCTCTGACAAATGTCAAAGAGAGAAAAGGAAGACCATCAATGGGGATGATATCATATGGGCCATCACAACCTTAGGATTTGAGGATTATGTGGACCCTTTAAAATCTTATCTTCAGAAATATAGAGACATAGAAGGAGAGAAGCTTAATATTCCAAAGCATCAACAAAGGCTGCAACAACAGCAACATCACCCACAAGACCAAAATAATATACCTTTAAGTAGTGTATACTCCTCAACAAATCTCATTTCTCAGCCTCCATATGTAGCCACGGATCAGCTTTTTTCCCTACCATTCTCCTCAAATTCAATTCAGAAACAGTTGCAGCCACAGGACCAGATTGATTCAGTGGGGCAATGGTAA 624 0.4119 MEDESHSNLPNGLIKGSPESPCSKTSNPTTTITHNNSNNKEQDRFLPIANVGRIMKKAIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYRDIEGEKLNIPKHQQRLQQQQHHPQDQNNIPLSSVYSSTNLISQPPYVATDQLFSLPFSSNSIQKQLQPQDQIDSVGQW. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01934 207 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 109 IPR003958 -
Seca4g01934 207 ProSitePatterns NF-YB/HAP3 subunit signature. 76 92 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca4g01934 207 Gene3D Histone, subunit A 32 160 IPR009072 GO:0046982
Seca4g01934 207 MobiDBLite consensus disorder prediction 141 161 - -
Seca4g01934 207 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Seca4g01934 207 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Seca4g01934 207 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Seca4g01934 207 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca4g01934 207 MobiDBLite consensus disorder prediction 1 41 - -
Seca4g01934 207 FunFam Nuclear transcription factor Y subunit B-3 34 158 - -
Seca4g01934 207 MobiDBLite consensus disorder prediction 10 41 - -
Seca4g01934 207 SUPERFAMILY Histone-fold 42 150 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01934 Seca-Chr4 32476885 32477508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01934 12 207 CCAAT-HAP3 Transcription Factor Family AT2G13570 61.215 1.16e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca4g01934 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01934 K08065 - gmx:100778216 308.145