Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01924 ATGAACAACAAAACCAACCGTAAACGGCAGGCGCCACCGCCGCCGCAACCCTCACCGGCGAGGCAGGCCCTCTCCCAGGATGAAGAGTTCGTCGACGAAGACGTCTTCCTGGACGAAACCCTCGTTTCTGAAGACGAAGAGTCCCTCATCCTCCGTGATATCGAGCAGCGGCAGGCCCTCGCCTCTCGTCTCTCCAAGTGGACTCGTCCTCCTCTTTCCTCTGAGTACCTCTCGCAATCTCGTAGTGTCCTTTTTCAGCAGCTGGAGATTGATTATGTAATTGGAGAGAGTCATAAAGAATTGCTGCCGAACTCTTCTGGACCTGCTGCCATTATTAGAATATTTGGAGTTACGAAGGAAGGACATAGTGTTTGCTGTAAAGTTCATGGGTTTGAACCATATTTCTACATCAGCTGTCCTCCTGGAATGGGTCCAGATGATATCTCTCATTTTCATCAAATTCTTGAGGGAAGGATGAGAGAAGCCAATAGAAACAATAACGTGGGAAAATTTGTTCGCCGTATTGAAATGGTGCAGAGAAGGAGTATTATGTACTATCAGCAGTCAAATTCCCATCCTTTTCTCAAAGTTGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGAGGTATTCAGCTTGATGGTCTGGGCATGAAAAGCTTCATGACTTATGAGAGCAATGTACTTTTTGCCCTTCGTTTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAAATTCCTGCTGAAAAATATAAAAAGACAGTAAAAGGCTTGTCTTACTGCCAATTAGAGTTCGATTGCCTGTATTCTGAATTGATTAGCCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCGTTTCGCATTTTAAGTTTCGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCATGATCCTGTTATCCAGATTGCTAATCTGGTTACCTTACAAGGAGAAGACCAACCATTTATTCGTAATGTGATGACCCTTAAATCATGTTCTCCTATTGTTGGTGTTGATGTGATGTCATTTGATACAGAAAGAGAAGTCCTGCTAGCTTGGAGGGATTTTATCCGTGAAGTGGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACTTGCCATATCTTATTGAGAGAGCCACAGCCCTAAAAATAGCAGAATTTCCAATTCTGGGCCGTATCAGGAACAGTAGAGTTCGAGTAAAGGATACAACTTTCTCATCAAGGCAGTTAGGTACCAGGGAAAGCAAAGAAGTTACAGTTGAAGGGAGAGTTCAGTTTGATTTGCTCCAGGCTATGCAAAGAGACTACAAATTAAGTTCTTATTCATTGAATTCTGTGTCAGCACACTTCCTTTCTGAGCAGTCACTGCTTGCTCATCTACTGCAGAAAGAGGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTAAAGGATGCATATCTCCCTCAACGGCTTTTGGATAAATTGATGTTTATTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCAATTTCTTTTCTTCTTTCCAGGGGCCAAAGCATTAAGGTACTCTCTCAACTTCTTAGGAAAGCAAAACAGAAGAACCTGGTCATTCCTAATGCCAAACAGGCAGGGTCAGAACAAGGAACGTTTGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATTTTATGAAAAGCCAATTGCTACTTTAGATTTTGCATCCTTGTATCCGTCTATTATGATGGCCTATAATTTATGTTATTGTACTCTGCTGACCCCTGAAGATGCTCGCAAGCTCAACATCCCTCTGGAGTCAGTGAACAAAACTCCATCTGGTGAAACATTTGTTAAATCAAATTTACAGAAGGGCATACTTCCTGAAATACTTGAAGAGCTATTAACAGCCCGTAAAAGGGCGAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTTGAGAAGGCTGTGCTAGATGGTAGACAGCTGGCCCTCAAGATTAGTGCAAATTCTGTATATGGGTTTACAGGGGCTACTATTGGTCAATTACCATGCTTAGAGATATCATCCAGTGTAACAAGCTATGGTCGACAGATGATCGAGCACACTAAAAAACTTGTGGAAGATAAATTTATAACGCTTAATGGCTATGAGCACAATGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAGTTTGGTGTTTCTTCTGTAGAAGAGGCTATGAACTTGGGGAGAGAAGCTGCCGAATATATTAGTGGAACTTTCATAAAGCCCATCAAGCTAGAATTTGAGAAGGTTTACTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCTGACAAATTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGCTTATTGGTAAAAAACCTGGTGAACGATTGCCTTCACAAAATACTGATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCGATTTCAGATCTTCTCATGAACCGTATGGATTTATCACTTCTGGTCATTACAAAGGGTTTGACGAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCTACTGCTCCAAATGTTGGAGATAGAGTACCTTATGTTATTGTTAAAGCTGCAAAAGGTGCCAAGGCTTATGAGAGATCAGAGGATCCTATCTATGTGCTGGAGAACAACATACCAATAGATCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGAATATTTGAACCAATTCTGAAAAATGCTAGCAAGGAACTTCTCCATGGAAGCCACACAAGATCTATTTCTATTTCTACTCCATCAAACAGTGGCATAATGAAATTTGCTAAGAAACAACTTACTTGCATTGGTTGCAAAGCTTTACTTAGCAATGGAGATCGTACTCTCTGCTCACATTGCAAAGGAAGGGAAGCTGAACTGTACTGTAAAACAGTGGCTCAAGTGTCTGATCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGGGATTGTCCAATTTTTTATCGACGTAAAAAGGCACAGAAAGATATGGCTGAAGCAAGGTTGCAATTGGACCGATGGAACTTCTAA 3282 0.4193 MNNKTNRKRQAPPPPQPSPARQALSQDEEFVDEDVFLDETLVSEDEESLILRDIEQRQALASRLSKWTRPPLSSEYLSQSRSVLFQQLEIDYVIGESHKELLPNSSGPAAIIRIFGVTKEGHSVCCKVHGFEPYFYISCPPGMGPDDISHFHQILEGRMREANRNNNVGKFVRRIEMVQRRSIMYYQQSNSHPFLKVVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEIPAEKYKKTVKGLSYCQLEFDCLYSELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERATALKIAEFPILGRIRNSRVRVKDTTFSSRQLGTRESKEVTVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSEQSLLAHLLQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLLTPEDARKLNIPLESVNKTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFITLNGYEHNAEVIYGDTDSVMVQFGVSSVEEAMNLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIVKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSNGDRTLCSHCKGREAELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWNF. 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01924 1093 SMART polmehr3 292 759 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca4g01924 1093 Pfam DNA polymerase family B 533 966 IPR006134 GO:0000166|GO:0003677
Seca4g01924 1093 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 68 1059 - -
Seca4g01924 1093 CDD DNA_polB_delta_exo 288 525 - -
Seca4g01924 1093 PRINTS DNA-directed DNA-polymerase family B signature 745 753 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca4g01924 1093 PRINTS DNA-directed DNA-polymerase family B signature 592 605 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca4g01924 1093 PRINTS DNA-directed DNA-polymerase family B signature 684 696 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca4g01924 1093 Pfam C4-type zinc-finger of DNA polymerase delta 1003 1074 IPR025687 -
Seca4g01924 1093 Gene3D Helix hairpin bin 648 700 - -
Seca4g01924 1093 Gene3D Palm domain of DNA polymerase 575 804 IPR023211 -
Seca4g01924 1093 FunFam DNA polymerase 89 264 - -
Seca4g01924 1093 CDD POLBc_delta 574 967 - -
Seca4g01924 1093 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g01924 1093 Pfam DNA polymerase family B, exonuclease domain 118 461 IPR006133 -
Seca4g01924 1093 SUPERFAMILY Ribonuclease H-like 109 539 IPR012337 -
Seca4g01924 1093 FunFam DNA polymerase 821 977 - -
Seca4g01924 1093 Gene3D - 293 519 IPR036397 GO:0003676
Seca4g01924 1093 FunFam DNA polymerase 332 573 - -
Seca4g01924 1093 Gene3D DNA Polymerase, chain B, domain 1 88 263 - -
Seca4g01924 1093 SUPERFAMILY DNA/RNA polymerases 558 968 IPR043502 -
Seca4g01924 1093 NCBIfam DNA polymerase (pol2) 346 964 - -
Seca4g01924 1093 Gene3D - 821 976 IPR042087 -
Seca4g01924 1093 ProSitePatterns DNA polymerase family B signature. 747 755 IPR017964 GO:0000166|GO:0003676
Seca4g01924 1093 FunFam DNA polymerase 648 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01924 Seca-Chr4 32266842 32282508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01924 8 1093 Core DNA Replication Machinery Family AT5G63960 82.081 0.0 1884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01924 K02327 - gmx:100817379 2029.6