Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01923 ATGGAATGGTATCTAAGTTCCCCTGATGATTTTATATCTTTGAACGACCTGGAGCTGACGCCAGAGCACCAAAGTTATTATTATTTTGACAATGCCAGGGCCAGCCAATCACCTAAGGAGATGAATCAGGGATTGATTGGGTTTACAAGGAAGAAAAGGAGGACGAAAAATTATCATCAGAAGCGGAAATGGAGAGTGAGATGGGTAAAAAAGAGGTGCAGCCATTGCAAGACGGAAGAGACACCGCAATGGAGGGTAGGGCCTTTGGGACCTAAGACACTGTGCAATGCTTGCGGAGTGCGATTCAAGTCTGGACGGTTAGTTCCTGAATATCGTCCAGCCACTAGTCCCACCTTTGATAGTAGGAAGCATTTCTAA 378 0.455 MEWYLSSPDDFISLNDLELTPEHQSYYYFDNARASQSPKEMNQGLIGFTRKKRRTKNYHQKRKWRVRWVKKRCSHCKTEETPQWRVGPLGPKTLCNACGVRFKSGRLVPEYRPATSPTFDSRKHF. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01923 125 Gene3D - 67 124 IPR013088 GO:0006355|GO:0008270
Seca4g01923 125 PANTHER GATA TRANSCRIPTION FACTOR 30 124 - -
Seca4g01923 125 FunFam GATA transcription factor 68 117 - -
Seca4g01923 125 Pfam GATA zinc finger 73 106 IPR000679 GO:0006355|GO:0043565
Seca4g01923 125 ProSiteProfiles GATA-type zinc finger domain profile. 71 103 IPR000679 GO:0006355|GO:0043565
Seca4g01923 125 SMART GATA_3 67 121 IPR000679 GO:0006355|GO:0043565
Seca4g01923 125 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 70 121 - -
Seca4g01923 125 CDD ZnF_GATA 72 123 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01923 Seca-Chr4 32244944 32245384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01923 45 124 C2C2-Gata Transcription Factor Family AT4G34680 57.500 2.09e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g01923 GATA 6.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01923 - - aprc:113869248 179.104