Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01919 ATGAAGTTAACCGGCGACAGCGGCGGTGGCCGGAAGGTCTTGGTCGGAGTGAAGTTAGATCCTCGGAGCCGGGAATTGCTGACGTGGGCTCTCGTCAAGGTAGCGGAGCCCGGCGACCTCGTCATTGCGCTTCACGTCCTCGACACTATCACTGAGGGCACGGCGTCGCTGCTATCTCTGGTGAAGACTTTCGATTCTGTTCTCGCCGTATACGAAGGCTTCTGCCATTTAAAGCAGGTTGATCTAAGGCTAAAAGTATGTCGAGGTGGTTCGCCTCGGAAGCTTCTGGTACAAGAGGCGAAATCGTTTGGTGTTGCGACAGTGATTCTGGGAACTTCTAAGTCCCATCATCCAATTCGTTCGTCGGTATCAGTTGCTAAATATTGCGCGAAGAAATTGCCAAAGTGTGTCTCTGTCTTCGCTGTTGATAATGGCAAAGTTGCATTCCATAGAGAAGCTGCCACAATTTGCAGTGATCAAGAAAAATTGCATGAAGGCCCAAATTTATCATCGAAATCATTGGTGGCTTTTACAACAAATAAAAGGATGAAGAATTGTGAAAGTTGTGCATGGCAAGAGACTTGTGAAACTGAACCAAAGGAAGGGTTTCCTGATGATCTTGAAAAGGAAAATCCACTTGCTTTGGTACCATTTCAAAAACTTGAGGATGCTCCTTGTTATTCAATTGTGGTGGGTAATTCGAAACAGTCAAAACCTGGTTGGTCACTCCTTCGCCAGGTATTCCAGCCCAGGAAGCAAACCCCCAAGTCTTCACTGAAAAATACATTTGTTTTTCAAAGGGCATTGCGACAGCCCAACTGCCATTCTTCAGCTGTAGTCCATCCAGATCATAAACAAATTAATATTGACCAAAATGATGATTCCACCCTGGATGGGGTGAGTGGTGCCATTGTGCCATTTGGATCTACTACTGTCTTTCCTCCTCCCTCTTTTTGCAGTGACTCAAATAGTCTTCCGGAAGAATTGATGGTCTTACAAGAGAAGTACTCATCTTCATGCCGAATATATAGTTTGCAGGAACTTGTATCTGCAACTGCCAACTTCTCCCCTGAAAATTTGGTTGGCAAAGGTGGTAGCAGTGATGTTTACAGAGGATGTCTTCCAGATGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCATCAGAAAATGTAGTAAAAGAGTTTGTTCAGGAAATTGAAATCATTACAACTTTGCATCACAAGAACATAATATCTCTATCTGGCTTTTGTTTAGAGGACAACCGTTTACTTCTGGTTTATGATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCATGGTAATGAAAAGGACTGTAATGCATTTGGTTGGCGAGAAAGATACCAGGTGGCTGTGGGTGTGGCTGAGGCATTGGACCATCTGCACAATGGCTGTGCACAAGCTGTGATCCATAAGGATGTCAAATCTTCGAATATCCTTCTTTCTGATGAATTCGAGGCTCAGCTCTCCGATTTCGGACTGGCTAGTTGGGGTTCTTCTTCTTCCCATATTACTTGCACTGATGTGGCCGGGACTTTTGGATACCTAGCTCCTGAATACTTTATGCATGGTAGAGTGACTGACAAAATTGATGTATATGCTTTTGGGGTTGTACTCCTTGAGCTTCTATCAAATAGGAAGCCCATTAACAATGAATGTCCAAAAGGCGCAGAGAGCCTTGTTATGTGGGCAACACCGATTTTGAAAGATGGGAAGCTCTCCCAGTTGCTTGATCCAAGCCTAGGCAGTGAATATGACCATTGGCAGATCAAGAGAATGGTGTTGGCTGCTACTCTCTGCTTAAGGCGAGCTCCTAGATTACGACCTCAAATCAGCCTTATATTGAAACTTCTGTGTGGTGATGAAGAAGTGACAAGATGGGCAGAGCTAGAGGTTAGTGCGCCTGAGGAACATGATGGATTTGATGAGGAACCAGTTCCAACTAATATTCAGTCCCACCTTAACCTTGCATTACTGGACTTGGAAGATGATGCAGTTTCTATCAGCAGTACTGAGCAGAGTGTCTCATTGGAGGACTATTTACAGGGAAGATGGAGTCGCTCTTCTAGTTTTGACTAA 2100 0.4438 MKLTGDSGGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTITEGTASLLSLVKTFDSVLAVYEGFCHLKQVDLRLKVCRGGSPRKLLVQEAKSFGVATVILGTSKSHHPIRSSVSVAKYCAKKLPKCVSVFAVDNGKVAFHREAATICSDQEKLHEGPNLSSKSLVAFTTNKRMKNCESCAWQETCETEPKEGFPDDLEKENPLALVPFQKLEDAPCYSIVVGNSKQSKPGWSLLRQVFQPRKQTPKSSLKNTFVFQRALRQPNCHSSAVVHPDHKQINIDQNDDSTLDGVSGAIVPFGSTTVFPPPSFCSDSNSLPEELMVLQEKYSSSCRIYSLQELVSATANFSPENLVGKGGSSDVYRGCLPDGKELAVKILKPSENVVKEFVQEIEIITTLHHKNIISLSGFCLEDNRLLLVYDFLSRGSLEENLHGNEKDCNAFGWRERYQVAVGVAEALDHLHNGCAQAVIHKDVKSSNILLSDEFEAQLSDFGLASWGSSSSHITCTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNECPKGAESLVMWATPILKDGKLSQLLDPSLGSEYDHWQIKRMVLAATLCLRRAPRLRPQISLILKLLCGDEEVTRWAELEVSAPEEHDGFDEEPVPTNIQSHLNLALLDLEDDAVSISSTEQSVSLEDYLQGRWSRSSSFD. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01919 699 Gene3D Transferase(Phosphotransferase) domain 1 430 641 - -
Seca4g01919 699 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 324 429 - -
Seca4g01919 699 CDD USP_Like 12 137 - -
Seca4g01919 699 ProSiteProfiles Protein kinase domain profile. 355 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01919 699 Gene3D Phosphorylase Kinase; domain 1 321 429 - -
Seca4g01919 699 SMART serkin_6 355 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01919 699 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Seca4g01919 699 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 139 - -
Seca4g01919 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Seca4g01919 699 Gene3D HUPs 10 143 IPR014729 -
Seca4g01919 699 PANTHER OS08G0249100 PROTEIN 120 649 IPR046958 -
Seca4g01919 699 FunFam Putative receptor-like serine/threonine-protein kinase 430 641 - -
Seca4g01919 699 SUPERFAMILY Protein kinase-like (PK-like) 335 625 IPR011009 -
Seca4g01919 699 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 10 143 - -
Seca4g01919 699 Pfam Universal stress protein family 11 137 IPR006016 -
Seca4g01919 699 Pfam Protein kinase domain 358 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01919 Seca-Chr4 32209714 32213519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01919 343 625 Trihelix Transcription Factor Family AT1G70460 43.750 3.22e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca4g01919 Pkinase 9.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01919 - - gmx:100815722 1140.95