Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01909 ATGTCTGGAAAGGGGAAGAAGAGGGAGGAGCATGACTGCGCTTCCGATGGCGACTCCGAAGGCCACGCGCCTCCCAAAAAGTCCCTCAAAAGAGATTCCGATGACGACCCCGACTCCATCGTTGTCTGCGAGATTTCAAAGAACAGGAGGGTTTCCGTGAGGAATTGGCAGGGCAGGATTGTGGTTGACATTCGCGAGTTTTACGTCAAAGATGGCAAGCAAATGCCAGGCAAAAAAGGTTTTTCAATCCTTCGTTTTAGTATCTCATTGACCATGGATCAGTGGAATGTGCTTCGTAATCACATTGAAGAAATTGACCAGGCAGTTAATGAGAATTCTTAG 342 0.4766 MSGKGKKREEHDCASDGDSEGHAPPKKSLKRDSDDDPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGFSILRFSISLTMDQWNVLRNHIEEIDQAVNENS. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01909 113 SUPERFAMILY ssDNA-binding transcriptional regulator domain 42 110 IPR009044 GO:0003677|GO:0006355
Seca4g01909 113 MobiDBLite consensus disorder prediction 1 39 - -
Seca4g01909 113 Gene3D Transcriptional Coactivator Pc4; Chain A 30 113 IPR009044 GO:0003677|GO:0006355
Seca4g01909 113 FunFam Putative transcriptional co-activator 33 113 - -
Seca4g01909 113 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 20 112 IPR045125 GO:0003713|GO:0060261
Seca4g01909 113 Pfam Transcriptional Coactivator p15 (PC4) 43 101 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01909 Seca-Chr4 32095960 32098545 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Seca4g01909 PC4 9.5e-20 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01909 K25815 - gmx:100820368 179.104