Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01891 ATGAAGAGTGAATTAGAGTTACCACCTGGCTTCAGATTTCACCCTACCGATGAGGAATTGGTGAATCACTACTTGTGTAGGAAATGTGCTGGTCAACCAATCTCTGTTCCTGTTATCAAAGAAATCGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGGTTTCCAGAGCGAAAAAGAATGGTACTTCTTCTCTCCAAGGGACCGGAAATACCCTAACGGTTCACGGCCGAACCGGGCCGCTGGAAGCGGTTATTGGAAAGCAACCGGAGCCGATAAACCGATCGGAAAACCGAAGGCATTGGGGATAAAAAAGGCACTGGTGTTCTATGCCGGAAAAGCCCCTAAAGGAGTGAAAACCAATTGGATCATGCATGAGTATCGCCTTGCTAATGTAGACAGATCTGCTGGCAAGAAAAACAATTTAAGGCTTGATGATTGGGTGTTATGTAGAATTTACAACAAGAAAGGGAAGATTGAGAAATTCAACAACACGGTGACACAGAAATTTTCAGAGGCTTATGAGAATGAGAGGAAGCCAGAAATTCATAAGCTAACGAATGACCAATTATACATGGACACGTCAGATTCAGTGCCAAGGTTGCACACGGACTCGAGTAGTTCAGGTCACGTGGTTTCACCGGATGTCACGTGCGATAAGGAGGTACAGAGCGAGGCCAAGTGGAATGAACTAGAGCTTGATAACGCGTTTGATTTTCAATTCAATTACTTGGATAATAACTTGTCAGTGGATGTGGATGACCCTTTTGGGACACAGGTTCAGTACCAAATGAACCAGCTCTCACCATTGCAGGACATGTTCATGTATCTACAAAGGCCATTTTGA 852 0.4401 MKSELELPPGFRFHPTDEELVNHYLCRKCAGQPISVPVIKEIDLYKFDPWQLPEMGFQSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKFNNTVTQKFSEAYENERKPEIHKLTNDQLYMDTSDSVPRLHTDSSSSGHVVSPDVTCDKEVQSEAKWNELELDNAFDFQFNYLDNNLSVDVDDPFGTQVQYQMNQLSPLQDMFMYLQRPF. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01891 283 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Seca4g01891 283 FunFam NAC transcription factor 16 161 - -
Seca4g01891 283 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Seca4g01891 283 PANTHER NAC TRANSCRIPTION FACTOR 56 7 201 - -
Seca4g01891 283 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Seca4g01891 283 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01891 Seca-Chr4 31809624 31811463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01891 1 283 NAC Transcription Factor Family AT1G01720 62.752 3.29e-125 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g01891 NAM 6.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01891 - - gmx:100814504 491.115