Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01889 ATGAAAAGCCTATGTCTTGAGTTGTTCTTTGGTGGAAGTGCCCCAGTTCTCAGCAGAGCCTTTTCACACCATTTAACTAGAAAGAGCTTTGGAAAACAATTTCAATTCCACTCTCGCTGCCTTGTTTTCTCTTCATATTCAGGTTCTGCAAGCCTATCAGTGATGGAACAAGTACAAGAGAAGCCTATATTTGATGGAGAGAAGGCTGCTTTGCTTGTTAAGGAGCTTAGACAGAGCTTTGATTCAGGCAAGACAAAAAGCTACAAATGGAGGATTTCCCAATTGGAGGGCATAGTTAAAATGCTAGAAGAGAGGGAGAATGACATTATTACAGCACTTGATAAGGACCTTTCTAAACCTGGATTTGAAGCATTTCTATCTGAGGTGTCTCAAACAAAAGCCTCATGTAATGAAGCACTTAAAGAACTGAAGCACTGGATGAAGCCTGAAAAGGTAAAAACTTCAATTACAACATATCCATCATCAGCAGAGATTGTGTCAGAACCACTGGGAGTTGTGTTGGTCATCTCAACATGGAACTTTCCTTTCATGCTATCACTTGATCCAATCATAGGAGCAATTTCAGCAGGTAATGCAGTGGTTCTAAAACCATCAGAAATTGCTCCAGCAACATCATCACTACTTGCAAATTTGCTCAAAAACTATCTAGACAACTCTGTCATAAGAGTTGTTGAAGGGGCTGTTCCTGAAACAACTGCACTCTTGGAGCAGAAGTGGGATAAGATACTATACACAGGTAGTGCTAGAGTAGCCCGCATTGTCATGGCTGCAGCTGCAAAGCACCTTACCCCAGTAATTCTAGAACTTGGAGGAAAGTGCCCTGCTGTTGTTGATTCAAATGTCAACTTACAAGTTACTGCTAGGAGGATAATAGCTGGAAAGTGGGCATGCAATAATGGACAAGCATGCATTTCTGTTGATTATATCATCACAAAAAAGGAATTTGCTTCAACACTTATAAATGCTCTAAAAGAGGAATTGGAGCAATTTTTTGGAAAAGATCCATTGCAATCAAAAGACATGTCACGTATTGTTTCTCCATTCCACTTTGCACGGCTTGTGAAGCTCTTGGATGAGGATAAGGTATCTGACAAAATTGTTTTAGGAGGTCAGAAGGATGAGATGCAATTAAAGATTGCTCCAACCATCATATTGGATGCTCCAGAAGATTCTATTGTAATGCAAGAAGAGATATTTGGGCCAATAATGCCAATTATCACTGTTGACAACATAGAAGATAGCTATAGTATAATCAAATCAAAGCCAAAACCTCTTGCTGCATATCTTTTCACAAACAATGAGAAGCTGAAGAAGGACTATGTTGAAAACATATCTTCTGGAGGGATGCTCATCAATGACACAATCTTACATGTTGCAACTCCTGGTTTGCCTTTTGGAGGAGTTGAAGAGAGTGGAATGGGTTGTTACCATGGAAAATTTTCCTTTGATGGTTTCAGTCATAAGAAAGCAGTCCTGTATAGAAGTTTTGAAGCAGATTCATCCATAAGGTATCCCCCATATACACCTGAAAAGCAAAAATTGCTGAAGGCCCTTATCAGTGGCAATATTTTCCGGGTTATTCTTACCTTGATTGGATGGGCTAAAGAATAA 1632 0.3958 MKSLCLELFFGGSAPVLSRAFSHHLTRKSFGKQFQFHSRCLVFSSYSGSASLSVMEQVQEKPIFDGEKAALLVKELRQSFDSGKTKSYKWRISQLEGIVKMLEERENDIITALDKDLSKPGFEAFLSEVSQTKASCNEALKELKHWMKPEKVKTSITTYPSSAEIVSEPLGVVLVISTWNFPFMLSLDPIIGAISAGNAVVLKPSEIAPATSSLLANLLKNYLDNSVIRVVEGAVPETTALLEQKWDKILYTGSARVARIVMAAAAKHLTPVILELGGKCPAVVDSNVNLQVTARRIIAGKWACNNGQACISVDYIITKKEFASTLINALKEELEQFFGKDPLQSKDMSRIVSPFHFARLVKLLDEDKVSDKIVLGGQKDEMQLKIAPTIILDAPEDSIVMQEEIFGPIMPIITVDNIEDSYSIIKSKPKPLAAYLFTNNEKLKKDYVENISSGGMLINDTILHVATPGLPFGGVEESGMGCYHGKFSFDGFSHKKAVLYRSFEADSSIRYPPYTPEKQKLLKALISGNIFRVILTLIGWAKE. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01889 543 PANTHER ALDEHYDE DEHYDROGENASE 69 533 IPR012394 GO:0006081
Seca4g01889 543 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 77 496 IPR016162 GO:0016491
Seca4g01889 543 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 278 478 IPR016163 GO:0016620
Seca4g01889 543 FunFam Aldehyde dehydrogenase 278 478 - -
Seca4g01889 543 FunFam Aldehyde dehydrogenase 77 281 - -
Seca4g01889 543 SUPERFAMILY ALDH-like 72 514 IPR016161 GO:0016491
Seca4g01889 543 Pfam Aldehyde dehydrogenase family 65 498 IPR015590 GO:0016491
Seca4g01889 543 PIRSF ALDH 50 538 IPR012394 GO:0006081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01889 Seca-Chr4 31797984 31802235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01889 41 543 Aldehyde Dehydrogenase Gene Family AT4G34240 66.799 0.0 690