Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01884 ATGGGAGACGGCACTGCTGCCAACGCCTCGAATCGCTCGAACAGCAACAGCGGAAGCAACAAGCCAGAGTGGCTGCAACAGTATGATCTGATAGGGAAGATTGGAGAAGGCACCTACGGTCTCGTCTTCCTCGCTCGGATAAAGTCTCCCACCAATCGTGGAAAATCCATCGCCATCAAGAAATTCAAACAATCCAAGGATGGCGACGGCGTCTCTCCCACCGCCATCCGTGAAATCATGTTACTGAGGGAGATAACACACGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATGCGGACATGTCTCTGTATCTAGCTTTCGATTATGCCGAACATGACCTTTATGAAATAATAAGACATCATAGAGACAAGGTCAACCAATCCATTAATCAATACACAGTTAAATCGCTACTATGGCAGTTGCTCAATGGACTAAACTATCTGCACAGTAATTGGATAATCCATCGAGATTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGGGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCGAGGATATATCAAGCTCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCCACACCAAATCCTTTTCAGCTCGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATTCGCAACATATACAAGGACACAAATATGACAATGCTAGCCTCTATAGTGTTGTACATCTATCTCCAAAAAGCCCTGCATATGATCTCTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATAACAGCAGCACAAGCTTTGGAGCATGAGTAA 1011 0.4332 MGDGTAANASNRSNSNSGSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSPTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDSQHIQGHKYDNASLYSVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHE. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01884 336 FunFam Cyclin-dependent kinase e-1 16 111 - -
Seca4g01884 336 ProSiteProfiles Protein kinase domain profile. 28 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01884 336 Gene3D Transferase(Phosphotransferase) domain 1 110 336 - -
Seca4g01884 336 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g01884 336 SUPERFAMILY Protein kinase-like (PK-like) 23 336 IPR011009 -
Seca4g01884 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Seca4g01884 336 CDD STKc_CDK8_like 27 335 - -
Seca4g01884 336 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Seca4g01884 336 PANTHER CELL DIVISION PROTEIN KINASE 26 336 - -
Seca4g01884 336 SMART serkin_6 28 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01884 336 FunFam Putative cyclin-dependent kinase E-1 112 336 - -
Seca4g01884 336 Pfam Protein kinase domain 28 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01884 336 ProSitePatterns Protein kinases ATP-binding region signature. 34 61 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01884 Seca-Chr4 31691765 31698939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01884 1 336 Core Cell Cycle Gene Families AT5G63610 83.036 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Seca4g01884 Pkinase 1.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01884 K02208 - gmx:100813433 632.484